Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00708 ATGGCGGAGCAAAGGACCGAGGATGATAGCTCAACGAAGGAAGTCGGAGAGGTGGAGAAGGAAAAACAGAAGAAGAATATGGATCGGGAACTTCTCAGCTGCTTGCTCCAACCTACAAGTATTGGTGTTGATCCGGACTATATTGGCATGCGTCGTCTCTTGCTCCATCGGAAGGCTGAAGCCGCGGTTCTTCGTCGGAAAGACTGGAAGTGCAATGGAAAAGGTTATGTGGCATTTCGCAATTACATACGCCGGCCAAGGAATTGGGAAGGCTCGCGTATACCAAGTCTTCAAAGCACCCCCGGAAGCAGTGGAAGATGGATTCTTCCTCCAAGTTCGATCTCTGCCTTGCATGAGGTGGATAGCTGGAGTTCTATCAAGGACTTACAGAGTCAACGAAGATCAAGTTTTAGCTCAAATGCAAGTGATAACAGTCAGCTACATACTCGTAGAACTGAATTTGCATATTCTTTCGTCGGAATGCATTGTATATTTGATCAATGCAAAGTCGCTGTTACGGTTTTGAAGTTTGGGCACATGAGCTCTGATCTATTAGCATATGGTGCAGCGGATGGGTCCTTGACTGTATGCAATGTCTCTGAACCATCTTCAACCGTCAAGCATTTGCTGGGCCATTCAAAAGACTTCACAGACTTCGATTTTTCATCGAATAATCAGTACATTGCATCATCGTCCATGGATAAAACCGTTAGAGTATGGGAGATATCAAGGGGAATTTGCATTAGAGTAATCTATGGGGTATCTTCACAACTGTGTATACGTTTTCATCCGGTAAATAACAACTTCCTCTCAGTTGGCAATGCAAATAAGGAAATCACGGTGTTTAATTTCAGCACTGGGAGGATTGTGACAAAATTAGTTCTTGATAGTGAGGTTACATCCATGGACCATGATCACACTGGTCAGATCCTTTTCTGTGGAGACGGAAATGGATATGTTTACTCTGTGAGCATGAACTCTCATACAGGAGCTTTATCCCGTGCTCACCGCCAATGGTGTAGTAGCCGGCGCAAATCTCCTGTATGTACTGTACAATATCGAAGCTTCTCTCTGCTGGCCAGGGGCCCTGTATTGCTAACTTGCACTCAAGATGGGAACTTGTCTTTCTTCAGTATTGCTTTGGAAGTTCAAGGATATTTGACCCTTCGTTGCTCACTCAAATTATCTCCAAGGATGCATAGCATCCGTGCTTCATTCTGCCCCCTACTCTCCCTGGAAAAAGGAGAGTACATTGGAAGTGAGGATTCAAATGTCTACTTCTATGATTTGACACGACCCAAACATACTTGTGTCAACAAGCTCCAGGGCCACCAGTTTCCAGTCATCGGGGTTGCGTGGAACCATGGGGAGAATCTGTTGGCTTCGTCAGATCTTTATGGGACGGTAATTGTATGGAAGAGATCAAAGATAAGTTAG 1437 44.89 MAEQRTEDDSSTKEVGEVEKEKQKKNMDRELLSCLLQPTSIGVDPDYIGMRRLLLHRKAEAAVLRRKDWKCNGKGYVAFRNYIRRPRNWEGSRIPSLQSTPGSSGRWILPPSSISALHEVDSWSSIKDLQSQRRSSFSSNASDNSQLHTRRTEFAYSFVGMHCIFDQCKVAVTVLKFGHMSSDLLAYGAADGSLTVCNVSEPSSTVKHLLGHSKDFTDFDFSSNNQYIASSSMDKTVRVWEISRGICIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIVTKLVLDSEVTSMDHDHTGQILFCGDGNGYVYSVSMNSHTGALSRAHRQWCSSRRKSPVCTVQYRSFSLLARGPVLLTCTQDGNLSFFSIALEVQGYLTLRCSLKLSPRMHSIRASFCPLLSLEKGEYIGSEDSNVYFYDLTRPKHTCVNKLQGHQFPVIGVAWNHGENLLASSDLYGTVIVWKRSKIS 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4063737 4077780 + Carg26796-RA Car20g00708 168567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00708 478 MobiDBLite consensus disorder prediction 1 24 - -
Car20g00708 478 ProSitePatterns Trp-Asp (WD) repeats signature. 228 242 IPR019775 -
Car20g00708 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 441 478 IPR001680 GO:0005515
Car20g00708 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 245 - -
Car20g00708 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 250 IPR001680 GO:0005515
Car20g00708 478 Pfam WD domain, G-beta repeat 205 240 IPR001680 GO:0005515
Car20g00708 478 Pfam WD domain, G-beta repeat 437 473 IPR001680 GO:0005515
Car20g00708 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 441 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00708 K24739 WDR13; WD repeat-containing protein 13 - csv:101204649 852.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00708 Car-Chr20:4063737 Car08g00308 Car-Chr8:1972092 7.08E-22 dispersed
Car20g00708 Car-Chr20:4063737 Car03g00788 Car-Chr3:6546732 1.28E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00708 Car_Chr20 FPKM 11.445661 9.909664 12.665189 11.783084 11.256618 9.843309 12.419908 14.488653 11.89436 13.362035