Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00709 ATGGCTACTTACTACTCGAGTTCGAATAACGAAAGGGATACTACTCCAATCCTCTATTCAAGGGGAGCTTTGCTCGGTTCGTATGAAGAAACAGCAGTTCTTCCACGGAATATGATGATGAATGCAAATTCTGGGACGTTCATGGATTCATTGTCTTCACAGGCGCAAAATGGTTGTAGTTCAATAACGCCCGTTGGAGCGGTTGGAGCTGCTCAACAGCAGCAGGAGTTCTTATCGAATCTTGGTGGTTCGCGAATTTCTGACCATGATTTCAATACATGGAGAGAGGATCGGAGTGAAATGCTTGGTACGAATTCGATGTGTGTTTCGACCAATGTTGTTCGTGGTGGGCAGAATTTGCAGGGTCAGGGGTTGTCCCTTACTCTGAGTACACAAATCCCATCTGGAATCCAAATGGCTTCAATCCCCTACAGAGACTCGGATGTCGGTTTAGCTTCATTCCTGAGGCCTAATCCGACTAGCTCGGGTGAGGATAGCTGCAGAAATGGCGCTTCTCGAGATGAACAATTGAGAAATGGAGAAAACTTGGCCAAGGGTGAATTAGCTCCTTACAGCATGTCTAGTATTGCAAGAACTATGCCTAATTCAAAGTACCTTAAGGCAGCACAGCAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCGAATAATGAGAGAGACCCGAGTTCTCACGAGCATGAAACTGGAACTGCCGAGAATGGCGATGCAGGAACTAAAAACGACACGTCGATGCAAACTGCAAGTGGAGTGTCTTCAAAACCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATACTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATAGTAGTATCATCATTTGATGTGATTGCTGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCCATAGCTGGTCAAGTCAGAGCTACTCGTAAAAGCCTAGGAGAGCACGAGAATTCTGGAAACGACAAAGGAGTTGGAATCACTCGTCTTCGATACGTGGACCAGCAGTTAAGGCAACAGAGAGCTCTTCAGCAGCTTGGCATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTTGCGAGGCAGACGGGTTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCACGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGCAGTGTGGACATGGACTCTATATCATCATCTGAAAATGCTAGCAAGGGAACAAAAGGAGATAACAAGACCTTCGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGCGACCGAAAGATGTAGCACTGGAGATATCGTCGACTTAAAATCAGACCAAGTCTCTAATCTCGTAAACTCGGGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATCGAAGCCGAAAACGAGCTGATAAAGCCGAATGAGGAGCTAAGGTCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCAGTCTCAGGGAGAGAGTGACAGGTTTATGGCTGCTGCTGCTGCCGCCTATCACATGTCTGAATTGGGAAGGTTCGGGACGGTTGGCGGGGTATCACTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGTGGCATACCTATGCCTGCTGGGACACACCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAACGCTGCTTCTGCAGCGTCTTCTCTCGGGGAAACAGTGCATTTCGAATGCGTAAATGCTGCTGGGAATCCGCAACTGAGGTTCGGCCCTTCCCATCTTTATCACGATTTTGTTGTGTAA 2040 46.08 MATYYSSSNNERDTTPILYSRGALLGSYEETAVLPRNMMMNANSGTFMDSLSSQAQNGCSSITPVGAVGAAQQQQEFLSNLGGSRISDHDFNTWREDRSEMLGTNSMCVSTNVVRGGQNLQGQGLSLTLSTQIPSGIQMASIPYRDSDVGLASFLRPNPTSSGEDSCRNGASRDEQLRNGENLAKGELAPYSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERDPSSHEHETGTAENGDAGTKNDTSMQTASGVSSKPQETGSNSTCELSHTEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENASKGTKGDNKTFEDDKEEDLQQSASSTATERCSTGDIVDLKSDQVSNLVNSGSNRLASFQNGAHIEAENELIKPNEELRSNVNNSNFFPDAIVQSQGESDRFMAAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGGIPMPAGTHHGFAAMRGDDMYNAASAASSLGETVHFECVNAAGNPQLRFGPSHLYHDFVV 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4092444 4096884 + Carg26795-RA Car20g00709 168568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00709 679 MobiDBLite consensus disorder prediction 224 243 - -
Car20g00709 679 MobiDBLite consensus disorder prediction 488 503 - -
Car20g00709 679 Coils Coil 281 301 - -
Car20g00709 679 MobiDBLite consensus disorder prediction 244 279 - -
Car20g00709 679 Pfam Associated with HOX 201 348 IPR006563 -
Car20g00709 679 MobiDBLite consensus disorder prediction 224 281 - -
Car20g00709 679 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Car20g00709 679 MobiDBLite consensus disorder prediction 475 517 - -
Car20g00709 679 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Car20g00709 679 MobiDBLite consensus disorder prediction 155 186 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00241 Car20g00709 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01093 Car-Chr2:7586077 Car20g00709 Car-Chr20:4092444 2.15E-77 dispersed
Car06g00463 Car-Chr6:2556492 Car20g00709 Car-Chr20:4092444 1.08E-95 dispersed
Car08g00564 Car-Chr8:3728662 Car20g00709 Car-Chr20:4092444 6.37E-105 dispersed
Car14g00330 Car-Chr14:1571650 Car20g00709 Car-Chr20:4092444 3.89E-104 dispersed
Car17g00796 Car-Chr17:6933530 Car20g00709 Car-Chr20:4092444 2.09E-105 dispersed
Car20g00129 Car-Chr20:717400 Car20g00709 Car-Chr20:4092444 2.88E-90 dispersed
Car20g00709 Car-Chr20:4092444 Car20g00987 Car-Chr20:11517710 1.28E-79 dispersed
Car02g00241 Car-Chr2:1634715 Car20g00709 Car-Chr20:4092444 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5388 PF07526 POX 1.10E-50 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00709 - - csv:101205137 1152.12