Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00716 ATGGTGAAGGAGACTGGTTATTATGATGTATTGGGTGTCAAATTCGATGCCTCCTCTGCAGAAATTAAGAAGGCATACTACGTTAAGGCAAGGCTAGTTCATCCAGATAAAAATCAAGGAGATCCGAAAGCGGCGGAAAATTTTCAGGTACTGGGAGAGGCTTATCAGGTATTGAGCGATCCCGAGAAGCGTGAAGCGTACGACAAGTATGGGAAGGCAGGAGTACAACAGGACACCATGGTAGACCCTGCAGCTGTGTTCGGTATGCTGTTCGGAAGTGAGTTCTTTGAAGAGTATGTTGGTCAGCTTGCTTTGGCTGTTCTATCAACTTTGGAGATTGAGGAAGATGCACAAGACCCCGAGATACGCAGGCAAAAAATTCAGGAAAAGCTAAAGATATTTCAAAAGGAAAGGGAAGAAAAGCTTGCAAACATTTTGAAAGATCACCTCCAACCATATGTTGATGGTCGGGTTGATGAGTTTGTGACATGGGCAAGTTCAGAAGCACGACGACTCTCCAATGCTGCTTTTGGTGAGACCATGCTGCACACCATTGGATACATATACACAAGGAAAGCTGCGAAGGAACTTGGGAGGGACAGACGTTATATGAAAGTGCCGTTTTTAGCCGAGTGGGTGCGAGATAAAGGACACCAGATAAAATCACAAGTGATGGCAGCTTCAGGTGCTGTTTCTTTGATTCAATTACAGGAAGAGTTGAAGCGGCTGAACGAAGGAGATAACCGAGACGAGAACCTGGCAAAAGCCATTGAAGAGAAGAAAGATGCTGTTCTTAACTCACTTTGGCAGATTAATGTGGTCGACATCGAATCTACTCTGTCACGTGTCTGCTCTGTAGTTATTAGAGACCCCAGCGTGTCGAAAGACGTACTGAAGCTACGAGCCAGAGCCCTGAAGAAGTTAGGAGCGGTATTCCAAGGTGCAAAGTCAGCTTACAGCAGAGAGAACAGCCTGAGGCATGAAAATGGTAAATCAATTGCTGTTGCTTCTTCAACTTCATGA 1023 45.26 MVKETGYYDVLGVKFDASSAEIKKAYYVKARLVHPDKNQGDPKAAENFQVLGEAYQVLSDPEKREAYDKYGKAGVQQDTMVDPAAVFGMLFGSEFFEEYVGQLALAVLSTLEIEEDAQDPEIRRQKIQEKLKIFQKEREEKLANILKDHLQPYVDGRVDEFVTWASSEARRLSNAAFGETMLHTIGYIYTRKAAKELGRDRRYMKVPFLAEWVRDKGHQIKSQVMAASGAVSLIQLQEELKRLNEGDNRDENLAKAIEEKKDAVLNSLWQINVVDIESTLSRVCSVVIRDPSVSKDVLKLRARALKKLGAVFQGAKSAYSRENSLRHENGKSIAVASSTS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4139429 4144339 - Carg26788-RA Car20g00716 168575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00716 340 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Car20g00716 340 Pfam X-domain of DnaJ-containing 135 322 IPR026894 -
Car20g00716 340 Coils Coil 124 144 - -
Car20g00716 340 CDD DnaJ 7 60 IPR001623 -
Car20g00716 340 PRINTS DnaJ domain signature 8 26 IPR001623 -
Car20g00716 340 PRINTS DnaJ domain signature 26 41 IPR001623 -
Car20g00716 340 PRINTS DnaJ domain signature 43 63 IPR001623 -
Car20g00716 340 PRINTS DnaJ domain signature 63 82 IPR001623 -
Car20g00716 340 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Car20g00716 340 Gene3D DnaJ domain 1 86 IPR036869 -
Car20g00716 340 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 328 - -
Car20g00716 340 Pfam DnaJ domain 7 68 IPR001623 -
Car20g00716 340 PANTHER BNAA01G05380D PROTEIN 1 328 - -
Car20g00716 340 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Car20g00716 340 SMART dnaj_3 5 63 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00716 - - - cmax:111484267 640.958
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00246 Car20g00716 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02328 Car-Chr4:18760396 Car20g00716 Car-Chr20:4139429 1.64E-121 dispersed
Car15g00585 Car-Chr15:3230268 Car20g00716 Car-Chr20:4139429 5.27E-120 dispersed
Car20g00716 Car-Chr20:4139429 Car08g00458 Car-Chr8:2941155 2.55E-15 dispersed
Car02g00246 Car-Chr2:1665236 Car20g00716 Car-Chr20:4139429 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g346 Blo02g00811 . . Bda08g00944 . . Bma05g00437 . . . Cma02g00379 Cma20g00831 Car02g00246 Car20g00716 . . . . . . . . . . . . . . . . . . Cone8ag1214 . . Lsi10g00394 . Chy11g00360 . . . . . . . . . . Cmo02g00386 Cmo20g00840 . . . . Cpe16g00258 Cpe05g01276 Bhi10g01979 Tan05g1273 . . Hepe08g0997 . . . . . . . . . . Csa02g01283 . Cme11g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004762 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 7 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00716 Car_Chr20 FPKM 0.189516 0.336181 0.59511 0.739455 2.10377 2.966197 2.918867 0.841959 1.159447 1.133947