Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00730 ATGGGCAAAGTCAAGGGGAAGCATCGTTTGGACAAGTACTATCGCCTTGCTAAAGAGCATGGCTATCGTTCTCGTGCCTCATGGAAACTCGCCCAGCTCGACTCCAAATACAACTTCCTCCGCTCCTCCCATGCCGTTCTCGATCTCTGCGCCGCCCCCGGTGGTTGGATGCAAGTCGCCGTCGAGCGGGTTCCCGTCGGTAGCCTCGTTGTCGGTGTCGATTTGGTTCCCATTGCGCCCGTTCGCGGTGCCATTGCTATCGAGCAGGATATCACGAAGCCGGAATGCAAGGCGAGGCTCAAGAAGATTATGAACGAGAAAGGGTGCGCTGCTTTTGATTTGATCTTGCACGATGGGTCGCCCAATGTTGGTGGGGCTTGGGCGCAGGAGGCCATGAGCCAGAATTCGTTGGTTATAGATTCTGTCAAATTAGCTACTCAGTTATTGGCTCCAAAGGGTGCATTTGTTACCAAGGTTTTCAGGTCACAAGATTACAGTTCTGTCCTATATTGTCTCAAGCAGTTATTTGAAAAGGTTGAGGTCGACAAACCAGCAGCAAGTCGATCTGCATCTGCAGAAATATATGTTTTGGGTCTTAGATATAAGGCTCCTGCAAAGATTGATCCACGACTTCTTGATGTAAAGCATCTGTTTCAAGGATCTGTAGAACCCCAACGGAAGGTTGTGGATGTACTTAGAGGAACAAAACAAAAGAGACATCGTGATGGATATGAAGATGGAGATTTGACTCTTCGGAAAGTGTCTTCTGCGTCTAATTACATCTGGTCAGATTCTCCTCTTGAGATCTTAGGAACTGTGACTTGTATAACTTTTGATGATCCTGCTTGTTTGCTGATTAAGAATCATGATTTAACAACTGAAGAGGTTCCGGTCATCATCTGGGTTAAGGCACTTTGTGATGATTTGCGTGTCCTGGGCAAGCAAGATTTTAAGCATCTGCTGAAATGGCGATTGCACATAAGGAAGGCCTTATCTCCCAATCAAAAGGCTACGCCCACTTCTGTTAAAGATGCTGAAAATGAGGTAAAGCAGAATGAAGACGATAAATTACTAAATGAGATGGAGGAGCTGACATATGCTATTGAACGGAAGAAGAAAAGGGAAAAGAAGCTTCTTGCAAAAAGGAGAGCTAAGGACAAAGCTAGGAAAGCGATGGGGATGCAACTAGACGTCATGGAAGAGGGTTATATTGATCACGAGTTATTCTCTCTTTCTAACATCAAGGGTAAGAATGACTTAAGAGTTATTGATTCAACTGACTATGATGTCGACAATGGTGAATTGGGAGAACATGAAAATGATGTAACCAACGAGGAAGATCATGGGTCTTCAGCTAGCGACATTGATTCTGATGAAGAGCGCAGAAGGTATGATGAACATATGGAGGAATTGTTGGATCAGGCTTATGAAAGCTTTGTTGCCAGAAAGGAAGGTAGTGCAAAGCAGAGGAAGCGTGCAAAAAAAGCCTACTCTGATGATGCCGAGTTACTTGAGGAGGATGAGAATGGAGGCGATGGTTTTCAATCTGATTATGACTCTGATGAAAATCTGGTAGACGAGGATAGAAATCCACTGATGGTATCTCTTGATGATGGTGGAGAGCCGACTCAAGAGGAGATCGCAAACAAATGGTTCGGTCAGGATATTTTTGCTGAAGCAGCGGAAGATGGAGATTTGAAGGAGTTGGATAGCGAAGATGATATGCAGGTTGATGGGCCAAAAGAAAAAACTGCTGTCACCAAAGTAGCCAAGTCAAATATTTCTAAGAATGCAAGAGAGAAGTCGAAAATCTCAACCAATGCAAAAGACTCTATTAAAGCAGATGATGGATTTGAGGTAGTCCCTGCCCCGGCTACAGATTCAAGCGACGATTCATCCTCTGAAGAATCCGAGGATGAAGAGCCCGACACAAAGGCTGAGATATTGGCATGTGCGAAAAAGATGGTGAGGAAAAAGCAAAGAGAGCAAATTCTTGATGATTCATATAACAAATACATGTTCGACGACACAGGCTTGCCCAAGTGGTTTTTGGACGAGGAGAAAAGACATCGTCAACCAATAAAGCCTATAACCAAAGAGGAGGTTGCAGCAATGAGAGCACAGTTCAAAGAAATCGACGCCCGCCCTGCTAAAAAGGTAGCTGAAGCTAAAGCACGAAAGAAGCGAGTTGCAATGAAGAAACTCGAAAAGGTTCGCAAGAAGGCAAACATCATCTCAGACCAGGCCGATATATCTGATCGATCAAAGAGCAAGATGATCGATCAACTTTACAAAAAAGCAGTGCCCCAGAGACCGAAAAAGGAATTTGTGGTTGCAAAGAAAGGAGTTCAAGTTCGGGTTGGGAAGGGTAAAACCTTAGTAGATCGACGAATGAAGAAGGATGCAAGGAAGCACGGAATGAGCAAGCAGGGCAAAGGTTCGAAGAAGGGAAAGAACTCAAAGGCTCCAAGAGGTAAGGGGGGATCTGCTAAGGCTTCCGGGAAGAAGGGAAGAAAGGGAAACAAATGA 2529 44.8 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLAQLDSKYNFLRSSHAVLDLCAAPGGWMQVAVERVPVGSLVVGVDLVPIAPVRGAIAIEQDITKPECKARLKKIMNEKGCAAFDLILHDGSPNVGGAWAQEAMSQNSLVIDSVKLATQLLAPKGAFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYVLGLRYKAPAKIDPRLLDVKHLFQGSVEPQRKVVDVLRGTKQKRHRDGYEDGDLTLRKVSSASNYIWSDSPLEILGTVTCITFDDPACLLIKNHDLTTEEVPVIIWVKALCDDLRVLGKQDFKHLLKWRLHIRKALSPNQKATPTSVKDAENEVKQNEDDKLLNEMEELTYAIERKKKREKKLLAKRRAKDKARKAMGMQLDVMEEGYIDHELFSLSNIKGKNDLRVIDSTDYDVDNGELGEHENDVTNEEDHGSSASDIDSDEERRRYDEHMEELLDQAYESFVARKEGSAKQRKRAKKAYSDDAELLEEDENGGDGFQSDYDSDENLVDEDRNPLMVSLDDGGEPTQEEIANKWFGQDIFAEAAEDGDLKELDSEDDMQVDGPKEKTAVTKVAKSNISKNAREKSKISTNAKDSIKADDGFEVVPAPATDSSDDSSSEESEDEEPDTKAEILACAKKMVRKKQREQILDDSYNKYMFDDTGLPKWFLDEEKRHRQPIKPITKEEVAAMRAQFKEIDARPAKKVAEAKARKKRVAMKKLEKVRKKANIISDQADISDRSKSKMIDQLYKKAVPQRPKKEFVVAKKGVQVRVGKGKTLVDRRMKKDARKHGMSKQGKGSKKGKNSKAPRGKGGSAKASGKKGRKGNK 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4258745 4264117 + Carg26477-RA Car20g00730 168589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00730 842 Pfam Domain of unknown function (DUF3381) 235 389 IPR024576 -
Car20g00730 842 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Car20g00730 842 MobiDBLite consensus disorder prediction 489 524 - -
Car20g00730 842 MobiDBLite consensus disorder prediction 562 646 - -
Car20g00730 842 MobiDBLite consensus disorder prediction 431 463 - -
Car20g00730 842 MobiDBLite consensus disorder prediction 802 822 - -
Car20g00730 842 Pfam Spb1 C-terminal domain 613 807 IPR012920 GO:0005634|GO:0006364|GO:0008168
Car20g00730 842 MobiDBLite consensus disorder prediction 594 616 - -
Car20g00730 842 MobiDBLite consensus disorder prediction 502 524 - -
Car20g00730 842 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 812 IPR028589 GO:0008649|GO:0031167
Car20g00730 842 MobiDBLite consensus disorder prediction 786 842 - -
Car20g00730 842 Coils Coil 718 738 - -
Car20g00730 842 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00730 K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] - csv:101209556 1365.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00254 Car20g00730 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00062 Car-Chr14:357517 Car20g00730 Car-Chr20:4258745 5.43E-37 dispersed
Car04g02554 Car-Chr4:20182467 Car20g00730 Car-Chr20:4258745 1.16E-18 transposed
Car02g00254 Car-Chr2:1737841 Car20g00730 Car-Chr20:4258745 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00730 Car_Chr20 FPKM 8.758827 8.993474 10.823261 11.932654 6.101438 4.859449 5.349403 6.986484 7.087753 8.990214