Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00733 ATGGAACAACAGAAAGATAAACCATCAGCTGCAGCAAACCCACCCATTCCTTCCTGTAGAAAGAAGAAAAATGAAGACGGTACATTCTTGGAGGATTTGAAGGATCACATCGACGAGTTCATTCATGCATCGATGGACGAACACAAATCGTGCTTCAAGAAAACTATCAACAAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGGAATTCAGAGACAAGTGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAGTAA 267 41.2 MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSKVVADRNSETSGVESSLPLRTTVSE 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4287782 4288600 + Carg26480-RA Car20g00733 168592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00733 88 PANTHER DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF 3 88 - -
Car20g00733 88 PANTHER - 3 88 - -
Car20g00733 88 MobiDBLite consensus disorder prediction 1 25 - -
Car20g00733 88 MobiDBLite consensus disorder prediction 69 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00733 - - - csv:101211034 169.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00259 Car20g00733 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00259 Car-Chr2:1757399 Car20g00733 Car-Chr20:4287782 5.02E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g599 . . Bda06g00939 Bda08g00932 . . . Bma12g00517 . . Cma02g00396 Cma20g00849 Car02g00259 Car20g00733 . . . . . . . . . . . . . . . . . . . . . Lsi10g00368 . Chy11g00378 . . . . . . . . . Sed05g3621 Cmo02g00402 Cmo20g00858 . . . . . Cpe05g01260 Bhi10g02011 Tan05g1310 Cmetu11g0117 . Hepe08g1016 . . . . . . . . . . Csa02g01256 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005499 2 1 1 2 2 1 2 1 1 0 1 1 1 1 1 2 1 1 3 1 1 1 2 0 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00733 Car_Chr20 FPKM 1.313328 1.868098 1.545251 1.666087 4.675693 4.77608 5.066623 1.663142 1.613993 1.995584