Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00736 ATGTGCAAGTTTTTCTGTTTTATCTTACATGGCGTTATGCTCATCGATTTAGATATGCTCCTGAAATTATTGAAATTTCGGGAAGCTGGAGTTCGAGGTTGCCGTGAAGGGACTCAGACATCAGTATGTTCCTATGATGTTTACTGCTTTGGGAAGGTGTTATTAGAGGTAGTGACAGGCAAGGTGGGCATCAGTGCTACTCCTGATACCCAATTGAAGGACTTTTATGATCAAACATTCCCATACATCAGTATCCACGACAAAGAATTGGTGAGCAAAATCATCGATCCGAATCTGATTGTCGATGAAGATTTCCTCGAGGAAGTGTGGGCTATGGCTGTCGTCGCGAAGTCATGTCTGAATCCAAGGCCTTCGAGACGACCCCAGATGAGATACATCCTGAAAGCTTTGGAGAATCCTTTAAAGGTCGTGAGAGAAGAAAGTTCGGGTTCGGCAAGGCTACGAGCGACTTCTTCACGAAGCTGGAATGCAGCTTTGTTCGGGAGCTGGCGACAGAGCCTATCAGATCTAACGGTTGTACCAGCTGCTGCCACAACAACGTCAAGAGCCATGGGAGGTAGCTTCAAACAGTCAGGAACTTCAGGTTCACAGGGAAGTGGCCAGAACAACAGCGGTGAAGCTTCACGGAGAAGGCATTCAAAGGAGATATTCCCCGAGCCAGCAGACGAGCAAGGCGAGAGAGGCGAGTATCATTACTAG 720 47.36 MCKFFCFILHGVMLIDLDMLLKLLKFREAGVRGCREGTQTSVCSYDVYCFGKVLLEVVTGKVGISATPDTQLKDFYDQTFPYISIHDKELVSKIIDPNLIVDEDFLEEVWAMAVVAKSCLNPRPSRRPQMRYILKALENPLKVVREESSGSARLRATSSRSWNAALFGSWRQSLSDLTVVPAAATTTSRAMGGSFKQSGTSGSQGSGQNNSGEASRRRHSKEIFPEPADEQGERGEYHY 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4312988 4315774 + Carg27532-RA Car20g00736 168595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00736 239 MobiDBLite consensus disorder prediction 188 239 - -
Car20g00736 239 MobiDBLite consensus disorder prediction 188 213 - -
Car20g00736 239 MobiDBLite consensus disorder prediction 214 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00736 - - - csv:101217062 358.607
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car19g00511 Car20g00736 CCT
Car19g00511 Car20g00736 ECH
Car02g00262 Car20g00736 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00926 Car-Chr11:5923356 Car20g00736 Car-Chr20:4312988 8.93E-83 dispersed
Car20g00736 Car-Chr20:4312988 Car09g00140 Car-Chr9:677243 1.55E-53 dispersed
Car01g01491 Car-Chr1:12674852 Car20g00736 Car-Chr20:4312988 4.92E-62 wgd
Car19g00511 Car-Chr19:6752073 Car20g00736 Car-Chr20:4312988 2.71E-86 wgd
Car02g00262 Car-Chr2:1772335 Car20g00736 Car-Chr20:4312988 1.89E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g596 . . Bda06g00940 . . Bpe12g00262 . . Cmo19g00681 . Cma02g00401 Cma20g00853 Car02g00262 Car20g00736 . Cpe04g00119 Cpe15g00542 Bhi05g01234 . . . . . . Cla02g00520 Cam02g0533 Cec02g0535 Cco02g0543 Clacu02g0533 Cmu02g0528 Cre02g0860 Cone12ag1153 Cone8ag1202 . Cone10ag1173 Lsi10g00365 . Chy11g00382 Cme01g01414 . . Bda15g00008 Bda14g00553 . . . Bma08g00556 . Cmo02g00407 Cmo20g00862 . Cma19g00668 . Car19g00511 . Cpe05g01256 Bhi10g02017 . . . . . . . . . . . . . Lsi11g01105 Csa02g01252 Chy01g00782 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001821 3 2 2 1 2 2 4 1 1 2 2 1 4 2 1 3 1 3 4 1 2 1 2 2 2 3 1 4 1 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00736 Car_Chr20 FPKM 11.051502 11.097716 15.367742 15.494089 11.69388 12.614188 11.107175 16.267065 15.188714 16.619394