Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00750 ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGTGAGTCTCTTCAGGGTCTCGAGAACGAGGACTCTGAAATTCAGTGGGTTTCTAAAGGTTCCGCGACTAAGGTTATTACAAAGGAATCTCTCCTTGCTGCACAGAAGGAGGACATGCGTAGAGTAATGGAGTTACTATCATTGAGGGAGCACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACTGCTGGTGTTACTATGATTGAGAATCGAAGTAATTGTTCCTCTGAGACTTCCTCCGTGGTGATGTGTGATATCTGCATGGAGGAAGTACATAGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGCAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAGAGTCGTAGAATCAGATGCATGGCCCACAAATGTAATGCAATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTCCTTCTTGAATCATACATCGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGCGCTCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTCTGTGAAGTAGAATGTTCTTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGATGCTCACTCGCCGTGTTCATGTTTGATGTGGGAACTTTGGATCAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTTCATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTGGAGAAGAACGGAGGCTGTAATCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAGCACACTTGGTCGAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTGTACCGTTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATATCGATTTCTGAAGAGAAGGAATCTATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTGTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCGTTCTATATGTTTGGGGATGAGCTATTCAAAGACGAGATGACTCAGGAGGAAAGGGAGATAAGGCAGCATCTATTTGAGGACCAACAGCAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGATCAATACACAAAAGACAGGGTAATGGATATAAGGATGCAAGTCATCAATCTGTCGGTTATCACCGATACCCTCTGCAAGAAGATGTACGACTGTATTGAGAATGATCTTCTGGGTTCACTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCGCTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTACAGACAAATATCTGCCATCAGACTGTGGAACAAGTGGTAAAGTGGAGAGAGGATTGTCAGAGCGGAATAGACTGAGTAGCTTGAATACTGATGAGAACGGATGCTCGTCTAGGAAGCGTGCCAGAGCTGAAGTCGTTACTGGCAACTGCTTCGATCTAAACTTACCTGCTGAGGTTGTTGATAGAAACTGA 1782 43.21 MEDCISSDEDYYDSDRESLQGLENEDSEIQWVSKGSATKVITKESLLAAQKEDMRRVMELLSLREHHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNCSSETSSVVMCDICMEEVHSNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSDAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEEKESMLRDFSWVNNGLCRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIRQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDRVMDIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTTDKYLPSDCGTSGKVERGLSERNRLSSLNTDENGCSSRKRARAEVVTGNCFDLNLPAEVVDRN 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4397091 4402362 - Carg23633-RA Car20g00750 168609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00750 593 Pfam Ariadne domain 329 593 IPR045840 -
Car20g00750 593 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Car20g00750 593 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Car20g00750 593 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00952 Car-Chr12:9609823 Car20g00750 Car-Chr20:4397091 1.88E-52 dispersed
Car17g00550 Car-Chr17:5131842 Car20g00750 Car-Chr20:4397091 1.92E-62 dispersed
Car19g00179 Car-Chr19:1653382 Car20g00750 Car-Chr20:4397091 1.68E-10 dispersed
Car20g00750 Car-Chr20:4397091 Car04g00789 Car-Chr4:4554454 1.19E-12 dispersed
Car02g00278 Car-Chr2:1881519 Car20g00750 Car-Chr20:4397091 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00750 K11968 - csv:101205066 1129.78