Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00755 ATGTCGACCGCCCCTTCCCCATCTCCATCTCCTTCTCCTTCTCCTTCCCCTTCCACCTCCTCCTCCGCTGCCGCCGCCGTCAATTTCCCTTCCCCCTCATCCTTACTGCCGGGAAAGCTCCCAGTCGACTTCAGCCCTCCTCTAATCGCAATGGTTGTCGTCATCGCTACCGCCTTTCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCACGTCATCCCTCCAATCCTCCTCCTAATCCGCCGCCACCGCCGCCGCTGGCGGCGGTGGCGGCGGAGACGACGGCGCGCCCGATCTTACCTCCCGTCCTCCTCCGGCGGCGACTTGGATTCGCTCCCTTACGATTCGCCTTTCTTCGAGCATACGGATGGCTTCCACGTGTTCTCCCCGTACGGCCTCGACGAATCCATCATCAAGACGATTCCACTCTCCGTCTATACTGCCAAGAGCCGCCGTGACAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTGGAGTTTGAAGACGACGATTACGTCCGAACGCTTCCGATTTGTTCTCACGCATTTCACGTTGATTGTATAGACGTATGGCTTAGATCACACGCGAACTGTCCTCTCTGTCGCGCGGTGGTTTTCAGGCCAGAATCTCCGTTCACGCCGGTTATGGCAGCAAGAATCCGGCCAAGCCTCGACGAAACGATCTTACAGAGCATCGTATTAGAGCCGCTAGCGGAAGGTCCTATTCCTAATCGAGATTCTTATCACGCAACAGAATCGGAAATCACGCCTTGCGTTGATGAACCAAGGAACAGTAATTCGTTAGAGGATCAAATGAACGGGCGAGATTTCTTACTGAAACGATCGTATTCATTCGGATTCGAACGAAGCTTGGCGTCAGAGAGAATGATTCTGGAACCAGCAACCGCATCGCCATGGAGGTACCGCCGTGGAAGCTTCTGGAGCAAACGGCCATCACCGTTCGGATCTCTACCGAAGGCGAGAGTGTTCTCATTCCGATACTACAGAGGAATGAAATCGCCGTTCTTCAGACGACGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGCGGAGGTTCATCGAGACGAAGCAAGTCGATGACAAGTCCAATGTTTCTCCGATCGTCGGTAACCAGCGGAGGAGCAGCAACGTTCTCATCGAGCCGATTGAGATGCGGAGATCCCGAGGCATTACTATCACCGGAGAGATTCAACCGAAGATGA 1242 54.83 MSTAPSPSPSPSPSPSPSTSSSAAAAVNFPSPSSLLPGKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHVIPPILLLIRRHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEHTDGFHVFSPYGLDESIIKTIPLSVYTAKSRRDSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDETILQSIVLEPLAEGPIPNRDSYHATESEITPCVDEPRNSNSLEDQMNGRDFLLKRSYSFGFERSLASERMILEPATASPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTSGGAATFSSSRLRCGDPEALLSPERFNRR 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4423999 4425240 + Carg23628-RA Car20g00755 168614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00755 413 MobiDBLite consensus disorder prediction 1 25 - -
Car20g00755 413 CDD RING-H2_PA-TM-RING 158 201 - -
Car20g00755 413 Pfam Ring finger domain 158 201 IPR001841 -
Car20g00755 413 MobiDBLite consensus disorder prediction 1 16 - -
Car20g00755 413 SMART ring_2 159 200 IPR001841 -
Car20g00755 413 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Car20g00755 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 205 IPR013083 -
Car20g00755 413 SUPERFAMILY RING/U-box 150 207 - -
Car20g00755 413 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 384 - -
Car20g00755 413 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 384 IPR044675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00755 Car-Chr20:4423999 Car19g00188 Car-Chr19:1723937 2.45E-24 dispersed
Car20g00755 Car-Chr20:4423999 Car02g01377 Car-Chr2:9087864 1.26E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00755 - K19041 csv:101206300 665.225