Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00766 ATGCCTTTCATATCTTCAAAACTACTCATTCTCTTCATTTGGGCATGCCTTTCAACCCTATCCTCTGCCAATCAGCCTTGGTTTTGGGCACATAATTGCTCTTCCCCTTTCAACCCTAACCACAACCCGTCTCCGCCACCACCTACATCACCAACCTCTCGAACACCGCCATCACAATCCCTACCACCATCACCACCAAGATCACGACGTCCTCGAACACCACCATCACAACAAATGCCATCACCACCACCACCATCACCACAACTGCCACCACCACCACCACCACAATCACGACGGTCACGAACACCACCATCCCGACAGCAATCACCGCCACCAACCCCACCATCCCGAAAGATCATAGTAGGTGGCTCAGAGCATTGGCATCTCGGCTTCGACTATAATGATTGGGCACTTAAGAACGGTCCCTTCCATATAAATGACATCCTAGTATTCAAATACGATCCTCCAAACAGTACAACTCCGGCTCACAGTGTCTATCAGCTCCCAAACATGAGAAGCTTCGTCAACTGTGATTTGGGAAAGGCCAAAATGCTTGCTAATTCAACACAAGGAAGTACTGAAAATGGCTTTGAATTTCAGCTCAAACACCAAAATCCTTACTACTTTGCTTGTGGAGAAGCCAATGGCTTCCATTGCCAAACTGGATCCATGAAGTTCACCCTAACACCAATACTTCAAGGTTGA 705 47.66 MPFISSKLLILFIWACLSTLSSANQPWFWAHNCSSPFNPNHNPSPPPPTSPTSRTPPSQSLPPSPPRSRRPRTPPSQQMPSPPPPSPQLPPPPPPQSRRSRTPPSRQQSPPPTPPSRKIIVGGSEHWHLGFDYNDWALKNGPFHINDILVFKYDPPNSTTPAHSVYQLPNMRSFVNCDLGKAKMLANSTQGSTENGFEFQLKHQNPYYFACGEANGFHCQTGSMKFTLTPILQG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4514516 4515300 + Carg23617-RA Car20g00766 168625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00766 234 MobiDBLite consensus disorder prediction 40 120 - -
Car20g00766 234 Pfam Plastocyanin-like domain 131 222 IPR003245 GO:0009055
Car20g00766 234 MobiDBLite consensus disorder prediction 40 117 - -
Car20g00766 234 ProSiteProfiles Phytocyanin domain profile. 117 232 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00766 - - - cmos:111448602 273.092
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00299 Car20g00766 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00910 Car-Chr10:5961802 Car20g00766 Car-Chr20:4514516 1.55E-44 dispersed
Car10g00911 Car-Chr10:5963179 Car20g00766 Car-Chr20:4514516 4.91E-53 dispersed
Car20g00766 Car-Chr20:4514516 Car04g02850 Car-Chr4:21614919 6.64E-10 dispersed
Car02g00299 Car-Chr2:2004588 Car20g00766 Car-Chr20:4514516 2.49E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g461 . . . . . . . . . . . Cma20g00889 Car02g00299 Car20g00766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004690 1 1 0 1 1 1 4 0 0 0 1 0 2 0 1 2 0 3 0 1 1 4 0 3 2 1 2 1 2 6 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00766 Car_Chr20 FPKM 12.466393 12.329353 16.747585 18.002867 12.054185 12.443908 15.004719 19.333883 22.741077 22.126238