Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00769 ATGGACGACGGCATCAACGCGTTGCTAAGTACGCTCATCACTCTCTCTCTCTCTCCAACCTGGTCTTACTCCTTTGCATCCAACCGGAGCCGTCGTTTCTCGCTTAATCTCGTCGTCGGAGAGAGAAGAAAGAAGGAGACGGAGACGGAGAAGGAGACGTATACGTATACGGACGGATACGGAGACTCTTTGAAGATCATGGCCCAGCCGTCCAACGGAGCTGATCTCAATCCCCAGGCCCCCCACCCCCACCAACAATGGTTTCAACAACAACAACAGTATCAACAGCAATGGATGGCGATGCAGTACCCCGCAGCCGCCATGGCCATGATGCATCAACAACAGATGATGATGTACCCTCCTCAGCATTACATGACGTATTCTCACCTTCCTTATCAACAGCAGCCGCCGCCGTTGCAGCAGCAGCAACAGCAAGCTCAGTCGCAGCGACCTCGTAGACAGGGGTCCACGGACGAGGTTAAGACGCTTTGGATTGGTGATCTTCAGCCCTGGATGGACGAGACCTATCTCCACAATTGTTTCGCTCACATCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACAGCTGATAAGGTATTGCAGAATTATAATGGAGCTATAATGCCTAACACAGATCTGCCTTTTCGTCTCAATTGGGCAACCTTTAGTGGAAGTGATAGGCGACCGGACACTGGGTCTGACCTATCTATATTTGTTGGTGATTTGGCTGCTGATGTAACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAAATACACATCTGTTAAGGGAGCCAAGGTTGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTACGGATTTGTCAGGTTTGGTGATGAAAGTGAAAGGACAAGGGCTGTGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCATCACAAGCTTTGGTATTGGCTGGTGGACATGCAAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGTGAATCGAACAACACGACTATATTTGTTGGTGGCCTTGATTCTGATGTTAGTGACGAAGATCTCAGGCAACCTTTCTCTAAATTTGGTGAGATTGTCTCTGTGAAAATCCCGATCGGAAAAGGATGTGGATTTGTGCAATTTGCCAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGTACAGTTATCGGCAAGCAAACTGTTCGTCTTTCTTGGGGTCGCAGTACAGGGAACAAGCAGAAAATTGGAGAAATGGGATTTGATGACGATGCATATGGAATTACGACACTTGTTTGGAGTGGGGATATCCCATCTTCCCTCTATTCTTGGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGACGTTATGGAGGGCAAGGCTATGGTGGCTATGGTGGTTACTATATACCACAGCATCAGGACGCAAACATGCATGCCGCAGCTGCCGCAGTCAATGGGACATCTTGA 1578 46.89 MDDGINALLSTLITLSLSPTWSYSFASNRSRRFSLNLVVGERRKKETETEKETYTYTDGYGDSLKIMAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMTYSHLPYQQQPPPLQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTDLPFRLNWATFSGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQKIGEMGFDDDAYGITTLVWSGDIPSSLYSWWRGDSNNQWNGGRYGGQGYGGYGGYYIPQHQDANMHAAAAAVNGTS 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4526621 4535372 - Carg23614-RA Car20g00769 168628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00769 525 MobiDBLite consensus disorder prediction 129 159 - -
Car20g00769 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 241 IPR000504 GO:0003723
Car20g00769 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 444 IPR000504 GO:0003723
Car20g00769 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 333 IPR000504 GO:0003723
Car20g00769 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 231 IPR000504 GO:0003723
Car20g00769 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 326 IPR000504 GO:0003723
Car20g00769 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 437 IPR000504 GO:0003723
Car20g00769 525 MobiDBLite consensus disorder prediction 129 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00769 - - - csv:101215609 637.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00300 Car20g00769 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00590 Car-Chr1:3442685 Car20g00769 Car-Chr20:4526621 7.19E-11 dispersed
Car02g01301 Car-Chr2:8664275 Car20g00769 Car-Chr20:4526621 4.62E-129 dispersed
Car09g00180 Car-Chr9:913225 Car20g00769 Car-Chr20:4526621 1.62E-09 dispersed
Car13g00058 Car-Chr13:477771 Car20g00769 Car-Chr20:4526621 1.14E-11 dispersed
Car15g01026 Car-Chr15:8013883 Car20g00769 Car-Chr20:4526621 1.50E-128 dispersed
Car20g00769 Car-Chr20:4526621 Car17g00635 Car-Chr17:5941236 4.33E-32 dispersed
Car01g01448 Car-Chr1:12435951 Car20g00769 Car-Chr20:4526621 4.72E-09 wgd
Car12g00491 Car-Chr12:3080303 Car20g00769 Car-Chr20:4526621 4.63E-10 wgd
Car19g00450 Car-Chr19:6228990 Car20g00769 Car-Chr20:4526621 2.35E-12 wgd
Car02g00300 Car-Chr2:2013659 Car20g00769 Car-Chr20:4526621 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00769 Car_Chr20 FPKM 17.507799 19.564873 18.38006 16.338512 20.779211 20.727703 22.548687 23.00415 23.336393 23.696133