Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00770 ATGGCCTCTTCAACAAACGACGTCGCCGACGAGTTCTTTCCCTTCTTAAGAATCTACAAAGACGGCCGCATCCAACGACTCCAAGTCGCCTCCGACATAGTCTCCGCCTGCGCCGACGACCCCAACTCCGCTTTCCGAGCAAAGGATGTCACGATCTCCGTGGATTCCGCCCTTTCGGTGCGTATTTTCATCCCCTCCGCCGTAGATCTGAATCAGAAGCTGCCCCTTCTGTTGTACGTCCACGGCGGTGCCTTCTGCTTCGAATCGGCTTTTAATTTGCAGTACCATAGCCACGTGGGTTCTCTCGCTGCTAAGGCCAACGCCGTCGCTGTTTCCGTCGAGTACCGCCTCGCGCCGGAGAATCCAATCCCCGCCTGCTACGACGATTGTTGGGATGCGTTACGGTGGATCGCGGCGCATGTGAACAGGGATGGTCCAGAGCCGTGGCTGAACCAGCACGCAGATTTGGACCGGATCTGTTTAGCTGGCGACAGTGCGGGCGCCAACATCTGCCATCACTTGGCTGTTCGTGCAGGAACATCAGGAGAGCAGCTGGGCAGAGTAAAGGTCGCGGCATTGGCTTTGATTCACCCGTTCTTTGGCGACGGGGCGGGGGACCGGCTGTGGAAGTATCTGTGTTCGGACACCACTTGGCTGAGGCCCACCGCACAGGATCTCGCCACGTTGCCTTGTCGGAGAGTGAAGATCTTTCTGGCAGAGAAAGATTCTCTGAAGTTCGGAGGGCGGAATTACGATGAGGATCTGAAGAGCAGCGGGTGGAAGGGGGCGGTGGAGACGGTGGAGCACGGCGGAGAGGATCATGTGTTTCATTTGAAGATGCCGGAGTGTGAAAAGGCCGTTGATTTGATGGAAAAATTATCCTGTTTCATAAACTTAGATTAG 903 55.92 MASSTNDVADEFFPFLRIYKDGRIQRLQVASDIVSACADDPNSAFRAKDVTISVDSALSVRIFIPSAVDLNQKLPLLLYVHGGAFCFESAFNLQYHSHVGSLAAKANAVAVSVEYRLAPENPIPACYDDCWDALRWIAAHVNRDGPEPWLNQHADLDRICLAGDSAGANICHHLAVRAGTSGEQLGRVKVAALALIHPFFGDGAGDRLWKYLCSDTTWLRPTAQDLATLPCRRVKIFLAEKDSLKFGGRNYDEDLKSSGWKGAVETVEHGGEDHVFHLKMPECEKAVDLMEKLSCFINLD 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4538328 4540237 + Carg23613-RA Car20g00770 168629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00770 300 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 159 171 IPR033140 -
Car20g00770 300 Pfam alpha/beta hydrolase fold 77 199 IPR013094 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00770 - - - csv:101215847 485.723
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00301 Car20g00770 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00770 Car-Chr20:4538328 Car02g00988 Car-Chr2:6991057 3.64E-42 dispersed
Car01g01446 Car-Chr1:12420459 Car20g00770 Car-Chr20:4538328 1.71E-66 wgd
Car02g00301 Car-Chr2:2018906 Car20g00770 Car-Chr20:4538328 2.99E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g443 . Blo15g00733 . Bda08g00848 . . . . . . Cma02g00444 Cma20g00893 Car02g00301 Car20g00770 . . . . . . . . . . . . . . . . . . . . . Lsi10g00302 . Chy11g00444 . . . . . . . . . . Cmo02g00453 Cmo20g00900 . . . . . . Bhi10g02087 . . . Hepe08g1071 . . Cla09g01703 Cam09g1798 Cec09g1861 Cco09g1952 . . Cre01g0708 . Csa02g01192 . Cme11g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001193 1 6 2 2 1 3 2 3 3 1 2 3 2 1 2 2 3 5 2 3 1 4 5 2 3 7 2 2 2 1 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00770 Car_Chr20 FPKM 52.061893 55.36311 114.054016 109.729324 211.240875 204.181381 209.472275 111.493866 113.546127 111.879234