Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00828 ATGGCGGTGGAGCTCCTCTCAGCCTGCACAAACACCCAACTCTCCGCCTCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCCACCGGCCTCCACACCCTCAAAAACCTCATCACATTACTCTCTCACTCTCATCCTTCAAATCTCGACTCCGATTGCCAAGCCGTCGCTAACTCCGCCGTCTCTCACTTCAAAAAGGCCATTTCTCTCCTCGGCCGCTCACCCAGAACTGGCCACGCTCGATTCCGTCGAGCCCCTTTGGATTCCTCTAAAATCTACAACGCCACGCCCATTCAACAAATCCCTCCGCCCGTTGAGCGCCTGGAATCCGCCACCACCATCAATTTCTCGTACTCCTCTGCTCCAAATGGCTCGTTTTTGACCTCGATTCCTGGTGCCGACTCTGAAATTAACCTCCAACACGAACCCTCTTCCTCTTCTTTTCAGATTACTGATCTTTCCAGAGCTTCTTCTGGTCTCAAGAGGAAGTGCGGGTCTGAGAATTTGGGCTCCGGGAAGTGCTCTGTATCCTCCGGTGGTCGTTGCCACTGCTCTAAGAAGAGCAGGAAAATGAGGCTAAAAAGGGTGGTGAGAGTGCCAGCCATAAGCTCAAAGAACGCTGATATTCCTCCGGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGCTATTATAAGTGTAGCAGTCTAAGAGGATGTCCAGCTAGAAAGCACGTTGAGAGAGCCTCAGATGATCCAAGTATGTTAATAGTGACATACGAAGGCGACCATAATCACTCGCAATCTGTTGCAGAGGCCTCAAGTCTTATACTCGAATCTTGGTGA 852 50.7 MAVELLSACTNTQLSASMDQDSAVQEAATGLHTLKNLITLLSHSHPSNLDSDCQAVANSAVSHFKKAISLLGRSPRTGHARFRRAPLDSSKIYNATPIQQIPPPVERLESATTINFSYSSAPNGSFLTSIPGADSEINLQHEPSSSSFQITDLSRASSGLKRKCGSENLGSGKCSVSSGGRCHCSKKSRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5497044 5498947 - Carg25489-RA Car20g00828 168687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00828 283 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car20g00828 283 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 17 282 - -
Car20g00828 283 SUPERFAMILY WRKY DNA-binding domain 206 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car20g00828 283 Gene3D WRKY domain 194 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car20g00828 283 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 282 IPR044810 GO:0003700
Car20g00828 283 Pfam Plant zinc cluster domain 161 208 IPR018872 -
Car20g00828 283 ProSiteProfiles WRKY domain profile. 205 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car20g00828 283 SMART WRKY_cls 210 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00867 Car20g00828 CCT
Car03g00867 Car20g00828 ECH
Car02g00338 Car20g00828 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01421 Car-Chr1:12282329 Car20g00828 Car-Chr20:5497044 2.50E-71 dispersed
Car03g00867 Car-Chr3:6952711 Car20g00828 Car-Chr20:5497044 3.71E-109 dispersed
Car09g00212 Car-Chr9:1055588 Car20g00828 Car-Chr20:5497044 1.91E-87 dispersed
Car09g00458 Car-Chr9:2547682 Car20g00828 Car-Chr20:5497044 5.74E-60 dispersed
Car19g00051 Car-Chr19:341369 Car20g00828 Car-Chr20:5497044 6.96E-52 dispersed
Car02g00338 Car-Chr2:2396518 Car20g00828 Car-Chr20:5497044 1.23E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5401 PF03106 WRKY 2.40E-26 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00828 - - bhj:120089490 518.464