Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00837 ATGTATCCCGATGATCAGCGGCGGCAGCCGTTGTTGGAGGAGGAAGATGAAGAGACTGCTTACAATTTAACGGAGAAGGTTGTGGTTGTTGGGATCGACGAAGCGGAGTCCGACTTGGATGTGGGTTTGCCGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACGGGGCCTGGGTTTTTGATGAGTATAGCGTTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTATAGCTGGGTATTCTTTGTTGTGGCTTCTGTTGTGGGCTACAGCCATGGGGCTTTTGATCCAGTTGCTCTCGGCCAGGCTTGGTGTTGCCACAGGCAAGCACTTGGCCGAGCTTTGTAGAGAAGAGTACCCTTCTTGGGCGAGAATTTTGCTGTGGGTCATGGCAGAGTTAGCCCTCATTGGGGCTGATATACAGGAAGTTATTGGGAGTGCTATTGCTATTAAGATTCTGAGTAATGGGGCTTTGCCTCTTTGGGCTGGAGTTATAATCACTGCTTTTGATTGTTTTATCTTCCTGTTTCTTGAGAACTATGGTGTGAGGAAACTTGAGGCTGTTTTTGCTGTTCTTATTGCTACCATGGCACTCTCATTTGCTTGGATTTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCAGTAGCTGTTGTGGGGTGTATCATTATGCCTCATAACGTGTTTCTGCACTCCGCTCTCGTGCAGTCACGAGACGTCAATCCGAGCAAGAAAGGGCGGGTTCGAGAAGCTCTAAGATACTATTCCATTGAGTCCACTCTTGCTCTTTTTGTGTCCTTCATCATCAACTTGTTTGTTACAACTGTGTTTGCTAAAGCTTTCTATGGCACAGACATAGCTAGTAGCATTGGTCTTGTAAATGCAGGGCAATATCTTCAAGATAAATATGGTGGAGGGCTCTTCCCCATTTTGTATATCTGGGCTATTGGTTTGTTAGCTGCTGGCCAAAGTAGCACCATCACTGGTACCTATGCAGGACAGTTTATCATGGGTGGCTTCCTGAACTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATAACTCGAAGCTTTGCGATTGTGCCAACTATGATTGTCGCTCTCGCGTTCGAAACTTCTGATTCGATGGTCGATGTTCTTAATGAATGGCTCAATGTCCTTCAGTCAATTCAGATACCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCCAAGGAACATCTAATGGGCAGTTTCAGAATTGGCCCCATTTTAAAGTTGTCCTCTTGGCTAGTGGCAGTCTTGGTGATGGCCATCAACGGATATCTTTTGGTGAGCTTCTTCTCATCAGAAGTGAACGGAGTGCTCGTTGCCATTTTCGTGTTCGTCTTCATCGCTGCATATCTCTCCTTTGTCGTTTACCTCGTCTATCGAAGCATTTCATTTTCAAGTTGGCACAGCTTCATTAACCGGAAGACTTCCACGGACAACGAAAACTGA 1533 45.73 MYPDDQRRQPLLEEEDEETAYNLTEKVVVVGIDEAESDLDVGLPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGKHLAELCREEYPSWARILLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITAFDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWIFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVNPSKKGRVREALRYYSIESTLALFVSFIINLFVTTVFAKAFYGTDIASSIGLVNAGQYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALAFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGSFRIGPILKLSSWLVAVLVMAINGYLLVSFFSSEVNGVLVAIFVFVFIAAYLSFVVYLVYRSISFSSWHSFINRKTSTDNEN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5675502 5678598 + Carg25498-RA Car20g00837 168696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00837 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 508 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car20g00837 510 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 8 508 - -
Car20g00837 510 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00345 Car20g00837 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00955 Car-Chr14:5785491 Car20g00837 Car-Chr20:5675502 1.81E-101 dispersed
Car02g00345 Car-Chr2:2494704 Car20g00837 Car-Chr20:5675502 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00837 K21398 - csv:101211711 932.554