Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00839 ATGGATATTCTCTTGCTTTCTATTTCTCTCTTCCTATTTACTCTTCTCTTTGCCTTCAATTTTGTGCTGAAACCACATCGCTTGAACCTCCCACCAGGCCCTCTCTTATGTCTTCCACTAATTGGCCATCTCCATCTCCTCAACCATCCCATCCATCGAACACTCACCAACCTCTCTCAAAAATACGGCCATGTCTTCTCCCTCCGATTTGGTTCCCGTCTCGTTGTTGTTATCTCTTCTCCTTCTGCCGTACAAGAATGCTTCACAAAGAACGATATTGCTCTTGCAAATCGCCCGCTGTTGAACTCTGGGAAATACCTAGACTACAACCATACCGTCATGTCGGTCTCCCCTTACGGCGAACATTGGAGAAACCTCCGCCGGATCGGCTCCCTTGAGATCTTCTCAACAAATCGCCTCAATTTGTTCTTGGGAGTTCGGAAAGAGGAAATCAAATGTTTGCTATGTAAATTATGTGGGGATTCATTGGAAGATCGATTCAGGGTCGTGGAATTGGAGCCCATGTTGCTTGATCTTATGTTCAATATTGTTATGAAAATGGTGGCTGGGAAGAAGTCTTTTGAGGGACATTCTTACAAGTTTAAAGAAATGGTGACACAAATTATGGCTCATAGTGGAGCAACCAATCCAGCAGACTTCATACCCTTATGGGGTTTCATTGATCCAACCGGTTTTGGGAAGAGGGGAAAGAAGCTTGCAAAGACATCTGATGAACTCCTTCAAGAATTAGTTGATGAAATTCGAGATAAAGAAGATGGAGGGAACACTATGATTCACCGTTTACTTAGCTTGCAGAATACCGAGCCTGAATATTACAGCGATCAAATTATCAAAGGATTGATTCAAGATATATTATTAGCCGGGATTGACACGATAGCTGTGACTTTAGAGTGGGCAATGTCTCAATTGCTCAACAATCCAGAGGTGTTAGAGAAAGCAAGAGCTGAGATAGACAGTTCGATTGGGTACGAGCGTTTAGTTAACGAATCTGATCTGCCGAGTTTGAGTTATGTTCAAGGAATAATCTCTGAGACTTTGCGGCTTCACCCAGCTGCTCCTCTCCTTTTGCCGCATTGTGCATTTGAAGAATGCAAAATAGAAGGATATGATGTTCCTCGTGATACGATAATATTCATCAATGCTTGGGCCATGCATAGAGACCCGAATCTATGGGAAGATGCTACCAGCTTTAAACCTGAAAGACATGCAAATGGGATGAAGAATGGCGCAGAGTCATACAAACTGATACCATTTGGGTTGGGGAGGAGAGCTTGTCCTGGTTTGGGAATGGCGCAACGAGTGGCTGGCTTGACTTTAGCATCGTTGATACAAGGCTTTGAATGGGAAAGATTGAACAACTCTTTAGTTGACATGAGTGAAGGTAAAGGGATTACAATGCCCAAAGCTCAACCCTTGGTAGCCAAGTGTAAGCCACGCCCCATCATGAAACTCGTTTATGAATCTGGCAATTGA 1494 43.57 MDILLLSISLFLFTLLFAFNFVLKPHRLNLPPGPLLCLPLIGHLHLLNHPIHRTLTNLSQKYGHVFSLRFGSRLVVVISSPSAVQECFTKNDIALANRPLLNSGKYLDYNHTVMSVSPYGEHWRNLRRIGSLEIFSTNRLNLFLGVRKEEIKCLLCKLCGDSLEDRFRVVELEPMLLDLMFNIVMKMVAGKKSFEGHSYKFKEMVTQIMAHSGATNPADFIPLWGFIDPTGFGKRGKKLAKTSDELLQELVDEIRDKEDGGNTMIHRLLSLQNTEPEYYSDQIIKGLIQDILLAGIDTIAVTLEWAMSQLLNNPEVLEKARAEIDSSIGYERLVNESDLPSLSYVQGIISETLRLHPAAPLLLPHCAFEECKIEGYDVPRDTIIFINAWAMHRDPNLWEDATSFKPERHANGMKNGAESYKLIPFGLGRRACPGLGMAQRVAGLTLASLIQGFEWERLNNSLVDMSEGKGITMPKAQPLVAKCKPRPIMKLVYESGN 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5693690 5696027 + Carg25500-RA Car20g00839 168698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00839 497 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PRINTS E-class P450 group I signature 346 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 Pfam Cytochrome P450 31 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 7 492 - -
Car20g00839 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Car20g00839 497 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 7 492 - -
Car20g00839 497 SUPERFAMILY Cytochrome P450 31 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car20g00839 497 Gene3D Cytochrome P450 15 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00835 Car-Chr20:5659070 Car20g00839 Car-Chr20:5693690 0 dispersed
Car20g00836 Car-Chr20:5662798 Car20g00839 Car-Chr20:5693690 3.69E-107 dispersed
Car20g00838 Car-Chr20:5681117 Car20g00839 Car-Chr20:5693690 3.80E-166 tandem
Car20g00839 Car-Chr20:5693690 Car20g00840 Car-Chr20:5730918 6.55E-73 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00839 K13260 - mcha:111017884 701.434