Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00844 ATGCCTCCCATCACTAAGATTATTGATGACTTTTTCTGGGTCTCTGGCATAGTTAAGATGAACAAAGCCACTTTCGAGTTACGTGATGATAGAGCCCAAATGCATTGTGCAATGGGGGTATCATTACTCAAAGTACTTCTCAGACATATTTCATCATTTCTTCAACTTTCATCTACTGACTTCATAAATTTACAACCAACTCTGAAGTACTTCCACAAAATAGAAGGGATCTTCAAACTATTGAGACCAATACTAGATGCAGTTGTTGATTCAGATATAGCTTCCGATGAAGAGCTTACTAAGGCGTTTGAAGAACTCGATCATTCAATTGATGAACTAAGGGCGCTCTTCGAAAATTGGCAACCGTTGTCGAGTAAAGTATACTTTGTATTGCAAAGTGAAGCATTGATATCAAAGATTGGGAAATCTTGCTTAGATATATTCCAGCTTTTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCATCATCTCTTGAGCACTGCGTCCAAAAAATTAAGCATTTTGGAAAGGAAGAAATGTCTTCTGTTATTAAAGATGCCATAAGGAATGAAGTAGAGGGCATTGCACCCAGCTCAGATGTTTTGGTGAAACTTGCAGATTTTCTGAGCTTGAGATCTAATCAGGAGATATTAATTGAGGCTGTAACACTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGAAGAAGCTGAGGGCATTGATCAAATGGTTGCTCTTGTAACCCATATGCATGAACGGTTTATTATGATAAATCAATCCCAAAATTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTGATGACAGATCCAGTTATTGTAGCATCGGGGCAGACGTACGAGCGGGTATTTATTAAAAATTGGATCGATCTGGGGATCAATGTTTGCCCGAAGACTAGACAGACATTGGTTCACACGAATCTTATACCGAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTAAAATTGTCTGATCCTTCGAGGTCGGTGAACTTAAACCAGCTTTCGCCTGTTCTCGCTGTGAACTTTGAGTCTGATACCCATCGAGAGCCCGTTTTTCCTCATTCCCCTGGTTACCAACCGATGTCCCCCCAGTCAACCAGGTCTCCAGGTTCAGGAAAGAACATGAACTCGCTTGGGGTAAGCTATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCTTTCTCTGAGGATTCCTTATCAAATGATGCTGGTGATGAACGTGAGATTGATGTTAGTAGACTGTTGCTATCAAGCTCGGAAGATCAAATGGCCAAATTGGAAGAAAATGGTTATGATTTGGTTGCTAAACCGTCTACGTCACCATCTAAAGCCAATGTTCCAGATACCAGTGGCGAGGATGAACCGTCTCATAGTCATAACAGGACCGCCTCCACCTCTAGTGCAGTCTCGAATACTAATCTCTCTCAAGGAACTTCAGGGGAACCCAATGAATCTGTCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTACCTCGACTACCAACCACAGAGAACCAGATCGGGAGCATCCACCGAGAGTAGCTGACCCAAGATCTCGAGGTAATACAATGTGGCTCCGACCATCAGAGAGGTTTGCTTCTAAGATGATTGCACCGTCTGCTAATGAGATGAGGCCTGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTTGAAACTTTGAGAGGAGCTACGGCTGAACTACGGCTACTGGCCAGACATAACATGGATAATCGAATAGTGATCGCTCAATCCGGGGCCATCGAATATTTGGTTGATTTGCTCCTGTCTGCAGACTCGAAGCTACAGGAGAATGCTGTGACAGCTCTTCTAAACTTATCGATCAATGATAATAACAAAAATGTCATCGCCCAGGCTAATGCAATTGAACCATTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTAGTTGAATTACTGGGTAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAATTTGTCGATATTCCACGAGAACAAGGCTAGAATCGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCTGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTCACCACGATTCCCGAGGGTCGGTCTGCAATTGGTCAGGAAGGTGGAATTCCTGTTCTTGTCGAGGTCGTCGAGTTGGGTTCTGGGAGAGGAAAGGAAAATGCAGCAGCAGCATTATTGCAGCTTTGCACAACAAGCAGTAGACATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCTTTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAAAAGGCTCAAGCGCTTCTTAGCCATTTCAGAAGCCAGAGACATGGGAATTCGGGAAGGGGGTAA 2601 43.71 MPPITKIIDDFFWVSGIVKMNKATFELRDDRAQMHCAMGVSLLKVLLRHISSFLQLSSTDFINLQPTLKYFHKIEGIFKLLRPILDAVVDSDIASDEELTKAFEELDHSIDELRALFENWQPLSSKVYFVLQSEALISKIGKSCLDIFQLFQSSNENLPEELSSSSLEHCVQKIKHFGKEEMSSVIKDAIRNEVEGIAPSSDVLVKLADFLSLRSNQEILIEAVTLEKLKESAEQAENTEEAEGIDQMVALVTHMHERFIMINQSQNSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGINVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRSVNLNQLSPVLAVNFESDTHREPVFPHSPGYQPMSPQSTRSPGSGKNMNSLGVSYRDGSSSLLSHSFSEDSLSNDAGDEREIDVSRLLLSSSEDQMAKLEENGYDLVAKPSTSPSKANVPDTSGEDEPSHSHNRTASTSSAVSNTNLSQGTSGEPNESVSDAAGESKSEPLAATSTTNHREPDREHPPRVADPRSRGNTMWLRPSERFASKMIAPSANEMRPDLSAIEAQVQKVVEELKSSSLETLRGATAELRLLARHNMDNRIVIAQSGAIEYLVDLLLSADSKLQENAVTALLNLSINDNNKNVIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLTTIPEGRSAIGQEGGIPVLVEVVELGSGRGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5912330 5916488 + Carg27745-RA Car20g00844 168703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00844 866 MobiDBLite consensus disorder prediction 455 555 - -
Car20g00844 866 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 705 747 IPR000225 GO:0005515
Car20g00844 866 Coils Coil 434 454 - -
Car20g00844 866 MobiDBLite consensus disorder prediction 530 544 - -
Car20g00844 866 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Car20g00844 866 MobiDBLite consensus disorder prediction 374 430 - -
Car20g00844 866 Coils Coil 216 246 - -
Car20g00844 866 Pfam Armadillo/beta-catenin-like repeat 696 733 IPR000225 GO:0005515
Car20g00844 866 Pfam Armadillo/beta-catenin-like repeat 614 651 IPR000225 GO:0005515
Car20g00844 866 Pfam Armadillo/beta-catenin-like repeat 653 692 IPR000225 GO:0005515
Car20g00844 866 MobiDBLite consensus disorder prediction 383 423 - -
Car20g00844 866 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 623 665 IPR000225 GO:0005515
Car20g00844 866 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 746 787 IPR000225 GO:0005515
Car20g00844 866 Pfam U-box domain 273 343 IPR003613 GO:0004842|GO:0016567
Car20g00844 866 MobiDBLite consensus disorder prediction 460 474 - -
Car20g00844 866 MobiDBLite consensus disorder prediction 485 529 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00348 Car20g00844 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00597 Car-Chr7:3024887 Car20g00844 Car-Chr20:5912330 1.38E-06 dispersed
Car08g00264 Car-Chr8:1657275 Car20g00844 Car-Chr20:5912330 1.49E-166 dispersed
Car12g00540 Car-Chr12:3592140 Car20g00844 Car-Chr20:5912330 5.53E-84 dispersed
Car17g01242 Car-Chr17:9438138 Car20g00844 Car-Chr20:5912330 4.08E-62 dispersed
Car20g00844 Car-Chr20:5912330 Car01g00541 Car-Chr1:3209827 2.80E-26 dispersed
Car02g00348 Car-Chr2:2520764 Car20g00844 Car-Chr20:5912330 0 wgd
Car20g00844 Car-Chr20:5912330 Car05g00123 Car-Chr5:628004 4.78E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00844 - - cmax:111483613 1506.12