Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car20g00854 | ATGGGAGGAACTAGTTTGGGAAGCTTCGTAATGGTCTTTGTTCTTGTTTTGACATCGTTATTAGCGGTTGTTCCGATGTCCGAGGCACAACTCCGACAGAATTTCTATGCCGATGTTTGCCCTAATGTCGAGAGCATAGTTCGAACTGCAGTTACGAAGAAGTTTCGACAAACGTTTGTTACAGTTCCTGCTACTCTCCGTCTCTTCTTCCATGATTGTTTTGTTCAGGGATGTGACGCGTCGGTGATGATTGGTTCGAATGGAGGCAATCAAGTAGAAAAGGATCATCCAGATAATCTTTCACTAGCCGGAGATGGATTCGATACGGTAATAAAAGCAAAAGCAGCGGTTGACGCTGTGCCGGAATGTAGAAACAAAGTCTCGTGCGCAGATATTCTTGTGATGGCGACTCGAGATGTCATTTCATTGGCTCGAGGACCTTCATATGCTGTGGAGCTAGGGAGGAAGGATGGGCTTGTTTCAAGGGCTTCAGATGTGGAGGGAAAATTGCCTCAGCCAAGCTTTAATCTCAATCAATTGAATGCCATGTTTGCTGCTCATGGCCTCTCTCAGGCTGACATGATTGCTCTGTCGGCTGCGCACACGGTAGGATTCTCCCACTGCACGAAGTTCTTGAACAGGATATACAATTTCAGCCGTACAAATCCAGTGGATCCAACGTTGAACGCGACATATGCAGGGAAGCTTCAAGGAATGTGTCCGAGAGACGTTGATCCAAGGATAGCAATAGACATGGATCCAAACACTCCCACTAGATTCGACAATATGTACTTCAAGAATCTCCAGCAAGGAATGGGCCTTTTCACTTCCGACCAAGTCCTCTTCACCGACGCAAGGTCCAGGCCCACTGTCAAGATTTGGGCCCATAGTGGACAAACCTTCTACAAGGCCTTCGTTGATGCCATGACTAAGTTGGGCCGGGTCGGAGTGAAGACCGGATCCAATGGCAATATTCGCACCGACTGTAGTGTTTTCAACTCTTGA | 1005 | 47.36 | MGGTSLGSFVMVFVLVLTSLLAVVPMSEAQLRQNFYADVCPNVESIVRTAVTKKFRQTFVTVPATLRLFFHDCFVQGCDASVMIGSNGGNQVEKDHPDNLSLAGDGFDTVIKAKAAVDAVPECRNKVSCADILVMATRDVISLARGPSYAVELGRKDGLVSRASDVEGKLPQPSFNLNQLNAMFAAHGLSQADMIALSAAHTVGFSHCTKFLNRIYNFSRTNPVDPTLNATYAGKLQGMCPRDVDPRIAIDMDPNTPTRFDNMYFKNLQQGMGLFTSDQVLFTDARSRPTVKIWAHSGQTFYKAFVDAMTKLGRVGVKTGSNGNIRTDCSVFNS | 334 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 6624753 | 6625984 | + | Carg28265-RA | Car20g00854 | 168713 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car20g00854 | 334 | ProSitePatterns | Peroxidases active site signature. | 62 | 73 | IPR019794 | GO:0004601 | |
| Car20g00854 | 334 | ProSiteProfiles | Plant heme peroxidase family profile. | 30 | 333 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Car20g00854 | 334 | Pfam | Peroxidase | 48 | 296 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Car20g00854 | 334 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 193 | 203 | IPR019793 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01189 | Car-Chr1:11033097 | Car20g00854 | Car-Chr20:6624753 | 5.52E-149 | dispersed | |
| Car04g02865 | Car-Chr4:21676783 | Car20g00854 | Car-Chr20:6624753 | 5.28E-136 | dispersed | |
| Car07g01069 | Car-Chr7:6272741 | Car20g00854 | Car-Chr20:6624753 | 0 | dispersed | |
| Car15g00080 | Car-Chr15:483529 | Car20g00854 | Car-Chr20:6624753 | 4.27E-147 | dispersed | |
| Car18g00374 | Car-Chr18:2301922 | Car20g00854 | Car-Chr20:6624753 | 5.24E-88 | dispersed | |
| Car18g01118 | Car-Chr18:11187680 | Car20g00854 | Car-Chr20:6624753 | 2.89E-87 | dispersed | |
| Car20g00854 | Car-Chr20:6624753 | Car07g00357 | Car-Chr7:1801617 | 1.97E-77 | dispersed | |
| Car20g00854 | Car-Chr20:6624753 | Car03g00841 | Car-Chr3:6803952 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car20g00854 | K00430 | - | csv:101208254 | 591.267 |