Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car20g00876 | ATGCCTGCAGGCAAACATGATGAGAGACATACTATGATTACAAATTCTAAAGAAGAGAATTCCCCTCCAAAACTAGTAGCTTCATCAAGCTCATCGGCGGCGCTGGCAACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCGACTGCAATTCAGCTCTATGATCTTCAGGACCGCCTCGGCCTTAATCAGCCAAGCAAGGTCGTCGACTGGCTGCTCAACGTCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATACCATCTGCAAGCCTCGGCCTTCACTACCAATCTATGCTACCACCTCATATAGCACATAGATCGGAGTTCAAAATCAACTCCGGCATCGACAAGGTCGAAATCGACGACGATGACGAACAAAAGCAACACAAATCCAATTCTAATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTCCATTGGGATCCCTCCTCCTCCTCCTCCTCCTCGTCGTCGTCGTCAACAACAAATCTTCCCTTCTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATCATGTCACCCCTTTGTCACTCTCAACTGGCTCTCAGTTCTTGGAGTTCAACAATCACTTGCACCAAAATTTCTTCATTAACAACTCTTTGAATACACCTCCTCCTATGCACTCAATAACCCACCCCGCTGTTAGGCCTTTTCATTTCAGCATGGCTACCAAATTTGTTGCTCAACATAAGAATAACAATGGAGATCCTGCCAATAAAGAGGACGGCTTCGGTTCTGATGAATGA | 888 | 47.52 | MPAGKHDERHTMITNSKEENSPPKLVASSSSSAALATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLPIPSASLGLHYQSMLPPHIAHRSEFKINSGIDKVEIDDDDEQKQHKSNSNPSSFSALLNNVSAPPFGFHWDPSSSSSSSSSSSTTNLPFFTSQAEDLHNFNHVTPLSLSTGSQFLEFNNHLHQNFFINNSLNTPPPMHSITHPAVRPFHFSMATKFVAQHKNNNGDPANKEDGFGSDE | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 8359926 | 8361635 | + | Carg27821-RA | Car20g00876 | 168735 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car20g00876 | 295 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 13 | 163 | IPR005333 | GO:0003700 | |
Car20g00876 | 295 | Pfam | TCP family transcription factor | 56 | 155 | IPR017887 | - | |
Car20g00876 | 295 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Car20g00876 | 295 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Car20g00876 | 295 | ProSiteProfiles | TCP domain profile. | 56 | 114 | IPR017887 | - | |
Car20g00876 | 295 | PANTHER | TRANSCRIPTION FACTOR TCP2-LIKE | 13 | 163 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car10g00278 | Car-Chr10:1325296 | Car20g00876 | Car-Chr20:8359926 | 5.81E-44 | dispersed | |
Car11g00191 | Car-Chr11:1099966 | Car20g00876 | Car-Chr20:8359926 | 6.70E-42 | dispersed | |
Car13g00905 | Car-Chr13:9396352 | Car20g00876 | Car-Chr20:8359926 | 3.03E-33 | dispersed | |
Car20g00867 | Car-Chr20:7665003 | Car20g00876 | Car-Chr20:8359926 | 1.47E-85 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5405 | PF03634 | TCP | 2.10E-26 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car20g00876 | - | - | cmo:103487504 | 395.586 |