Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00876 ATGCCTGCAGGCAAACATGATGAGAGACATACTATGATTACAAATTCTAAAGAAGAGAATTCCCCTCCAAAACTAGTAGCTTCATCAAGCTCATCGGCGGCGCTGGCAACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCGACTGCAATTCAGCTCTATGATCTTCAGGACCGCCTCGGCCTTAATCAGCCAAGCAAGGTCGTCGACTGGCTGCTCAACGTCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATACCATCTGCAAGCCTCGGCCTTCACTACCAATCTATGCTACCACCTCATATAGCACATAGATCGGAGTTCAAAATCAACTCCGGCATCGACAAGGTCGAAATCGACGACGATGACGAACAAAAGCAACACAAATCCAATTCTAATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTCCATTGGGATCCCTCCTCCTCCTCCTCCTCCTCGTCGTCGTCGTCAACAACAAATCTTCCCTTCTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATCATGTCACCCCTTTGTCACTCTCAACTGGCTCTCAGTTCTTGGAGTTCAACAATCACTTGCACCAAAATTTCTTCATTAACAACTCTTTGAATACACCTCCTCCTATGCACTCAATAACCCACCCCGCTGTTAGGCCTTTTCATTTCAGCATGGCTACCAAATTTGTTGCTCAACATAAGAATAACAATGGAGATCCTGCCAATAAAGAGGACGGCTTCGGTTCTGATGAATGA 888 47.52 MPAGKHDERHTMITNSKEENSPPKLVASSSSSAALATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLPIPSASLGLHYQSMLPPHIAHRSEFKINSGIDKVEIDDDDEQKQHKSNSNPSSFSALLNNVSAPPFGFHWDPSSSSSSSSSSSTTNLPFFTSQAEDLHNFNHVTPLSLSTGSQFLEFNNHLHQNFFINNSLNTPPPMHSITHPAVRPFHFSMATKFVAQHKNNNGDPANKEDGFGSDE 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8359926 8361635 + Carg27821-RA Car20g00876 168735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00876 295 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 163 IPR005333 GO:0003700
Car20g00876 295 Pfam TCP family transcription factor 56 155 IPR017887 -
Car20g00876 295 MobiDBLite consensus disorder prediction 1 15 - -
Car20g00876 295 MobiDBLite consensus disorder prediction 1 26 - -
Car20g00876 295 ProSiteProfiles TCP domain profile. 56 114 IPR017887 -
Car20g00876 295 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 13 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00278 Car-Chr10:1325296 Car20g00876 Car-Chr20:8359926 5.81E-44 dispersed
Car11g00191 Car-Chr11:1099966 Car20g00876 Car-Chr20:8359926 6.70E-42 dispersed
Car13g00905 Car-Chr13:9396352 Car20g00876 Car-Chr20:8359926 3.03E-33 dispersed
Car20g00867 Car-Chr20:7665003 Car20g00876 Car-Chr20:8359926 1.47E-85 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5405 PF03634 TCP 2.10E-26 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00876 - - cmo:103487504 395.586