Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00882 ATGGCTGATACTAGAGATACTCCCATGTCTTCAATGTTCTGTAGAAGGAATCCCTCAAGACTCATCATTCAGGGGCTGTTGCTGTTCTCATTGTTGAGGTTGAATTATGCATCCACGGATCCTGATGTGGAAGGAGAAGCTTTGGTTGATTTGTTAGTTGCACTGAATGATTCCAATCATCAAATAACTGATTGGAACTATCACTTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAACGTTATATCATTGAGCTTGGGTTCAGCAGGATTTTCAGGATCACTCTCTCCTTCAATTACAAAACTCAAATATTTGGCCAGTCTGGATTTGCAGAACAATAATATAGCTGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCCATCCCTGCAGCTTGGGGTCAACTTGCTGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCTCTATTCTTTTCAATTCCAATGTTCAACTTTTCAAGAACTGGATTAAACTGTGGCTTTAGGTTGGATAAACCTTGTGTTTCGACCTCTCCCCATCGAGCTTCTGTAAAGAATTCTAAGGTTGGGGTAGTGGCAAGTACTGCAAGCTGTGGGGGATTCATTCTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACATGCATAGGCTTAAGGATTCCATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCGTTGCGGGAAATCCAGCTGGCGACCGATAACTTTAACGAGACGAACATCATTGGCCAAGGAGGGTTTGGAAAAGTATATAAAGGAATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTAACTGACTACAATAGTCCTGGTGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCATAGAAATCTCCTCCGGTTGATCGGTTTCTGCACGACTACGTCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTTAGCGTGGCTCATCGCTTGAGAGATTTAAAACCAGGAGAAAGAAGCTTGGACTGGGCCACGAGGAAACAGATAGCCTTTGGTGCAGCCCATGGTTTGGAGTATTTGCATGAGCACTGTAATCCTAAGATCATCCACCGTGATCTGAAGGCTGCAAACATATTATTAGACGACGACTTCGAAGCTGTTCTTGGAGATTTCGGATTAGCCAAGCTAGTCGATACTAAAGTAACTCATATTACCACTCAAGTGCGCGGTACAATGGGTCATATCGCCCCGGAATACTTGTCCACTGGTAAGTCATCCGAAAAGACTGATGTTTTTGGATATGGTATCACCCTTCTTGAGCTTGTCACCGGTCAGCGCGCAATAGATTTCTCCCGTCTCGAAGAGGAGGAAGACGTTCTTCTACTTGATCATATAAAGAAGTTACAGAGGGAGAACAGGCTTGAAGATGTTGTGGACAAGAATTTAACAAGCTACGACAAGAAAGAAGTCGAAAACATAGTTCAGGTGGCGTTGCTTTGCACTCAAGGCTCGCCCGAGGACCGGCCGACGATGGCAGAAGTTGTGAACCTACTACATGGAGAAGGGCTAGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAGGTGTCCCTTTTGTGTCACCAATTTGTTTGGGGAGAAGAGTCAAGTCATGATCAAGAAGCCATACAGTTATCTAAAGCCAGATAG 1812 43.87 MADTRDTPMSSMFCRRNPSRLIIQGLLLFSLLRLNYASTDPDVEGEALVDLLVALNDSNHQITDWNYHFVSPCFSWSHITCRNGNVISLSLGSAGFSGSLSPSITKLKYLASLDLQNNNIAGVLPDYLANMTHLQNLNLANNNFNGPIPAAWGQLAGLKHLDLSDNNLTGEVPALFFSIPMFNFSRTGLNCGFRLDKPCVSTSPHRASVKNSKVGVVASTASCGGFILLSIGAFFAYRCFYMHRLKDSMFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNETNIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKQIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLTSYDKKEVENIVQVALLCTQGSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8660234 8667526 + Carg27798-RA Car20g00882 168741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00882 603 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Car20g00882 603 ProSiteProfiles Protein kinase domain profile. 281 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00882 603 Pfam Protein kinase domain 282 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00882 603 Pfam Leucine rich repeat 110 168 IPR001611 GO:0005515
Car20g00882 603 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
Car20g00882 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00763 Car-Chr4:4404331 Car20g00882 Car-Chr20:8660234 1.33E-98 dispersed
Car20g00882 Car-Chr20:8660234 Car05g00023 Car-Chr5:126905 2.34E-166 dispersed
Car20g00882 Car-Chr20:8660234 Car04g00361 Car-Chr4:2040497 4.10E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89623 PF00069 Pkinase 6.90E-45 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00882 - - bhj:120088289 1105.89