Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00913 ATGGATGAGCAGGCTTCGATAGCGAATAGCACAGACGATACAATCGTTTGCTATGCGCCTAGCATGATCACAACAAATGGGGTGTGGCAAGGCGATAACCCTCTTGATTATTCTCTCCCTCTCTTCATCTTACAGTTGACAATGGTGGTTGTGATGACTCGCACTTTGGTTTTCCTCTTAAAACCCTTACGTCAACCTCGAGTCATCTCTGAAATTTTGGGCGGAGTGATTTTGGGGCCTTCGGTTCTAGGGAGGAGTGCAGATTTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAACGTGGGGCTTCTCTACTTTTTGTTCTTGGTTGGTGTGGAGATGGATCTGTCAGTGATTCGTAGAACTGGGACGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCATTCAGCATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAACAGATGAGGAATTGAACATCACTTACATTATGTTTCTTGGTATTGCACTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAACTCAGAGATTGGAAGGATGGCTATGGCCTCTGCCCTTTTCAATGACATGTGTGCTTGGGTTCTCTTAGCTATAGCCATAGCCTTATCTGAGAATGATACCTCATCTATGGCTTCCTTATGGGTTATATTGTCAAGTACAGGCTTTGTTTTGTTTTGTATCTTCATCGTTCGACCCTTGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTATCAGTGAGTTCTATATATGTTTGATCCTCACAGGGGTTATGATCTCAGGGTTTGTTACAGATGCCCTTGGAACACACTCGGTTTTTGGGGCTTTTGTGTTCGGGTTGGTTATCCCCAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTTCTCCCTCTCTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGAATCGCATAGAAGGATCAACCTCTTGGGTAGCTATTCTATCAATCACTCTCCTTGCTTTTGCTGGAAAAATCATTGGAACTCTCCTTGCTTCCATTTGTTATCAGATGTCCTATCGAGAAGGTGTCACCTTAGGCTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAACGTCGGAAAGGACCAAAAGGTGTTGGATGATAAAACGTTCACAGTTATGGTGATTGTAGCCCTCTTTATGACTGGGATAATAACGCCTGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCGTATAAGAAACGAACAATCCAATCATCGAAACCAGATTCAGAGTTCAGAGTATTAGTTTGCATCCACACACCTCGAAATGTGCCAACGATCATTAACCTCCTTGATGCCTCAAACCCAACCAAAAGATCCCCAATTTGCATTTACGTTCTACACTTGGTCGAACTCACAGGCCGAGCCTCGGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGCCCTGCCCTAAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAGCAGCACGTCGAATGCATCTCAGTTCAGCCGCTCACAGCCATTTCCCCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCCGAGGATAAACGTGTGGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTGGATGGAGGAATGGAAGCCACAAATCCAGCGTTTAGATTGGTAAACCAAAATGTGTTAGCCAATGCCCCTTGTTCCGTCGGAATCCTAGTGGATCGAGGCTTAAACGGCTCGAATCGAGTCGCATCGAACAAGGAATGTCACTATAACATAACCATGTTGTTCTTCGGTGGACAAGACGATAGAGAAGCCCTATCATACGCATGGAGAATGTCAGAACATCCACGAGTAAGCTTAACCGTAATGCGATTCATCGCTGGAGAAGAAGCATCAGAACCAAACCAAGAAGATAACACACCAATAGCTTCAACTACAGAAACAGATGCCGACAGAGAGAGGAAACTGGACGAAGAACTCATAAAGGAATTCAGAACAAAAAGCTCAAATAACGAATCAATATCTTACAACGAGAAAGTCTCGAACAACGGCGAGGAGACAGTAGCAGGCATACGATCAATGGATGATGCTCACGACCTATACATCGTGGGGAGAGGAGAATCTCACATATCGCCTCTCACCGCTGGACTCACAGACTGGAGCGAATGTCCAGAGCTTGGAGCAATCGGCGATTTGTTAGCTTCGTCGGATTTTGCAGCGACGACATCAGTTTTGGTAGTTCAACAGTTCGGAGCAGCAATCATGGCGGATCATGGAGACGAAGAAGATCCAAGCGAGCCCTTCCAAAGCTTGAGATCCACGAATTTGCGGCCACATACTCCTTCAGAACCTCAAAACATGTACAGTACATGA 2490 44.82 MDEQASIANSTDDTIVCYAPSMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRTLVFLLKPLRQPRVISEILGGVILGPSVLGRSADFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGTKAMAIAVAGMILPFSIGAAFSFQLHKTDEELNITYIMFLGIALSVTAFPVLARILAELKLINSEIGRMAMASALFNDMCAWVLLAIAIALSENDTSSMASLWVILSSTGFVLFCIFIVRPLISWMIRKTPEGESISEFYICLILTGVMISGFVTDALGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVNRIEGSTSWVAILSITLLAFAGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDKTFTVMVIVALFMTGIITPVVTIIYRPTRRFLPYKKRTIQSSKPDSEFRVLVCIHTPRNVPTIINLLDASNPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVECISVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKECHYNITMLFFGGQDDREALSYAWRMSEHPRVSLTVMRFIAGEEASEPNQEDNTPIASTTETDADRERKLDEELIKEFRTKSSNNESISYNEKVSNNGEETVAGIRSMDDAHDLYIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAIMADHGDEEDPSEPFQSLRSTNLRPHTPSEPQNMYST 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 9886724 9890546 + Carg24307-RA Car20g00913 168772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00913 829 PANTHER BNAA09G08340D PROTEIN 12 803 - -
Car20g00913 829 PANTHER CATION/H + ANTIPORTER 12 803 - -
Car20g00913 829 Gene3D - 41 438 IPR038770 -
Car20g00913 829 MobiDBLite consensus disorder prediction 797 829 - -
Car20g00913 829 Pfam Sodium/hydrogen exchanger family 49 431 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Car20g00913 829 MobiDBLite consensus disorder prediction 669 692 - -
Car20g00913 829 MobiDBLite consensus disorder prediction 807 829 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00639 Car-Chr1:3766680 Car20g00913 Car-Chr20:9886724 5.79E-124 dispersed
Car02g00450 Car-Chr2:3533367 Car20g00913 Car-Chr20:9886724 0 dispersed
Car03g00155 Car-Chr3:2852012 Car20g00913 Car-Chr20:9886724 3.08E-113 dispersed
Car04g01011 Car-Chr4:5810853 Car20g00913 Car-Chr20:9886724 1.26E-174 dispersed
Car07g01313 Car-Chr7:8198153 Car20g00913 Car-Chr20:9886724 0 dispersed
Car08g00430 Car-Chr8:2801676 Car20g00913 Car-Chr20:9886724 8.93E-111 dispersed
Car11g01295 Car-Chr11:10743030 Car20g00913 Car-Chr20:9886724 3.53E-177 dispersed
Car13g00009 Car-Chr13:101704 Car20g00913 Car-Chr20:9886724 1.00E-139 dispersed
Car14g00668 Car-Chr14:3693597 Car20g00913 Car-Chr20:9886724 1.56E-171 dispersed
Car16g00066 Car-Chr16:428899 Car20g00913 Car-Chr20:9886724 7.03E-115 dispersed
Car16g00507 Car-Chr16:3242592 Car20g00913 Car-Chr20:9886724 0 dispersed
Car17g00919 Car-Chr17:7545370 Car20g00913 Car-Chr20:9886724 1.01E-112 dispersed
Car18g01212 Car-Chr18:11697252 Car20g00913 Car-Chr20:9886724 2.35E-124 dispersed
Car20g00913 Car-Chr20:9886724 Car16g00506 Car-Chr16:3230834 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00913 - - csv:101219265 1427.92