Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00913 ATGGATGAGCAGGCTTCGATAGCGAATAGCACAGACGATACAATCGTTTGCTATGCGCCTAGCATGATCACAACAAATGGGGTGTGGCAAGGCGATAACCCTCTTGATTATTCTCTCCCTCTCTTCATCTTACAGTTGACAATGGTGGTTGTGATGACTCGCACTTTGGTTTTCCTCTTAAAACCCTTACGTCAACCTCGAGTCATCTCTGAAATTTTGGGCGGAGTGATTTTGGGGCCTTCGGTTCTAGGGAGGAGTGCAGATTTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAACGTGGGGCTTCTCTACTTTTTGTTCTTGGTTGGTGTGGAGATGGATCTGTCAGTGATTCGTAGAACTGGGACGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCATTCAGCATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAACAGATGAGGAATTGAACATCACTTACATTATGTTTCTTGGTATTGCACTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAACTCAGAGATTGGAAGGATGGCTATGGCCTCTGCCCTTTTCAATGACATGTGTGCTTGGGTTCTCTTAGCTATAGCCATAGCCTTATCTGAGAATGATACCTCATCTATGGCTTCCTTATGGGTTATATTGTCAAGTACAGGCTTTGTTTTGTTTTGTATCTTCATCGTTCGACCCTTGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTATCAGTGAGTTCTATATATGTTTGATCCTCACAGGGGTTATGATCTCAGGGTTTGTTACAGATGCCCTTGGAACACACTCGGTTTTTGGGGCTTTTGTGTTCGGGTTGGTTATCCCCAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTTCTCCCTCTCTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGAATCGCATAGAAGGATCAACCTCTTGGGTAGCTATTCTATCAATCACTCTCCTTGCTTTTGCTGGAAAAATCATTGGAACTCTCCTTGCTTCCATTTGTTATCAGATGTCCTATCGAGAAGGTGTCACCTTAGGCTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAACGTCGGAAAGGACCAAAAGGTGTTGGATGATAAAACGTTCACAGTTATGGTGATTGTAGCCCTCTTTATGACTGGGATAATAACGCCTGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCGTATAAGAAACGAACAATCCAATCATCGAAACCAGATTCAGAGTTCAGAGTATTAGTTTGCATCCACACACCTCGAAATGTGCCAACGATCATTAACCTCCTTGATGCCTCAAACCCAACCAAAAGATCCCCAATTTGCATTTACGTTCTACACTTGGTCGAACTCACAGGCCGAGCCTCGGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGCCCTGCCCTAAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAGCAGCACGTCGAATGCATCTCAGTTCAGCCGCTCACAGCCATTTCCCCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCCGAGGATAAACGTGTGGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTGGATGGAGGAATGGAAGCCACAAATCCAGCGTTTAGATTGGTAAACCAAAATGTGTTAGCCAATGCCCCTTGTTCCGTCGGAATCCTAGTGGATCGAGGCTTAAACGGCTCGAATCGAGTCGCATCGAACAAGGAATGTCACTATAACATAACCATGTTGTTCTTCGGTGGACAAGACGATAGAGAAGCCCTATCATACGCATGGAGAATGTCAGAACATCCACGAGTAAGCTTAACCGTAATGCGATTCATCGCTGGAGAAGAAGCATCAGAACCAAACCAAGAAGATAACACACCAATAGCTTCAACTACAGAAACAGATGCCGACAGAGAGAGGAAACTGGACGAAGAACTCATAAAGGAATTCAGAACAAAAAGCTCAAATAACGAATCAATATCTTACAACGAGAAAGTCTCGAACAACGGCGAGGAGACAGTAGCAGGCATACGATCAATGGATGATGCTCACGACCTATACATCGTGGGGAGAGGAGAATCTCACATATCGCCTCTCACCGCTGGACTCACAGACTGGAGCGAATGTCCAGAGCTTGGAGCAATCGGCGATTTGTTAGCTTCGTCGGATTTTGCAGCGACGACATCAGTTTTGGTAGTTCAACAGTTCGGAGCAGCAATCATGGCGGATCATGGAGACGAAGAAGATCCAAGCGAGCCCTTCCAAAGCTTGAGATCCACGAATTTGCGGCCACATACTCCTTCAGAACCTCAAAACATGTACAGTACATGA 2490 44.82 MDEQASIANSTDDTIVCYAPSMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRTLVFLLKPLRQPRVISEILGGVILGPSVLGRSADFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGTKAMAIAVAGMILPFSIGAAFSFQLHKTDEELNITYIMFLGIALSVTAFPVLARILAELKLINSEIGRMAMASALFNDMCAWVLLAIAIALSENDTSSMASLWVILSSTGFVLFCIFIVRPLISWMIRKTPEGESISEFYICLILTGVMISGFVTDALGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVNRIEGSTSWVAILSITLLAFAGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDKTFTVMVIVALFMTGIITPVVTIIYRPTRRFLPYKKRTIQSSKPDSEFRVLVCIHTPRNVPTIINLLDASNPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVECISVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKECHYNITMLFFGGQDDREALSYAWRMSEHPRVSLTVMRFIAGEEASEPNQEDNTPIASTTETDADRERKLDEELIKEFRTKSSNNESISYNEKVSNNGEETVAGIRSMDDAHDLYIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAIMADHGDEEDPSEPFQSLRSTNLRPHTPSEPQNMYST 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 9886724 9890546 + Carg24307-RA Car20g00913 168772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00913 829 PANTHER BNAA09G08340D PROTEIN 12 803 - -
Car20g00913 829 PANTHER CATION/H + ANTIPORTER 12 803 - -
Car20g00913 829 Gene3D - 41 438 IPR038770 -
Car20g00913 829 MobiDBLite consensus disorder prediction 797 829 - -
Car20g00913 829 Pfam Sodium/hydrogen exchanger family 49 431 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Car20g00913 829 MobiDBLite consensus disorder prediction 669 692 - -
Car20g00913 829 MobiDBLite consensus disorder prediction 807 829 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00913 - - - csv:101219265 1427.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00639 Car-Chr1:3766680 Car20g00913 Car-Chr20:9886724 5.79E-124 dispersed
Car02g00450 Car-Chr2:3533367 Car20g00913 Car-Chr20:9886724 0 dispersed
Car03g00155 Car-Chr3:2852012 Car20g00913 Car-Chr20:9886724 3.08E-113 dispersed
Car04g01011 Car-Chr4:5810853 Car20g00913 Car-Chr20:9886724 1.26E-174 dispersed
Car07g01313 Car-Chr7:8198153 Car20g00913 Car-Chr20:9886724 0 dispersed
Car08g00430 Car-Chr8:2801676 Car20g00913 Car-Chr20:9886724 8.93E-111 dispersed
Car11g01295 Car-Chr11:10743030 Car20g00913 Car-Chr20:9886724 3.53E-177 dispersed
Car13g00009 Car-Chr13:101704 Car20g00913 Car-Chr20:9886724 1.00E-139 dispersed
Car14g00668 Car-Chr14:3693597 Car20g00913 Car-Chr20:9886724 1.56E-171 dispersed
Car16g00066 Car-Chr16:428899 Car20g00913 Car-Chr20:9886724 7.03E-115 dispersed
Car16g00507 Car-Chr16:3242592 Car20g00913 Car-Chr20:9886724 0 dispersed
Car17g00919 Car-Chr17:7545370 Car20g00913 Car-Chr20:9886724 1.01E-112 dispersed
Car18g01212 Car-Chr18:11697252 Car20g00913 Car-Chr20:9886724 2.35E-124 dispersed
Car20g00913 Car-Chr20:9886724 Car16g00506 Car-Chr16:3230834 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car20g00913 . 10 809 Antiporter Super Family AT2G13620 71.2 0.0e+00 1132.1
Car02g00450 . 10 790 Antiporter Super Family AT2G13620 71.1 0.0e+00 1111.3
Car03g00383 . 75 828 Antiporter Super Family AT3G53720 67.4 1.8e-278 955.7
Car07g00960 . 76 810 Antiporter Super Family AT3G53720 59.0 4.4e-232 801.6
Car16g00507 . 83 779 Antiporter Super Family AT3G53720 50.9 7.3e-187 651.4
Car04g00658 . 83 766 Antiporter Super Family AT3G53720 50.2 4.9e-183 638.6
Car16g00506 . 83 774 Antiporter Super Family AT3G53720 50.1 4.9e-183 638.6
Car16g00507 . 1 797 Antiporter Super Family AT5G41610 68.4 6.3e-306 1047.0
Car04g00658 . 1 766 Antiporter Super Family AT5G41610 67.2 1.6e-296 1015.8
Car16g00506 . 1 777 Antiporter Super Family AT5G41610 66.5 1.5e-294 1009.2
Car04g00657 . 1 694 Antiporter Super Family AT5G41610 66.3 2.3e-260 895.6
Car03g00383 . 8 818 Antiporter Super Family AT5G41610 51.2 1.4e-209 726.9
Car04g00658 . 1 766 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Car16g00506 . 11 796 Antiporter Super Family AT4G23700 64.3 3.9e-287 984.6
Car16g00507 . 1 779 Antiporter Super Family AT4G23700 63.8 3.3e-278 954.9
Car04g00657 . 1 692 Antiporter Super Family AT4G23700 62.3 2.3e-247 852.4
Car04g00658 . 4 766 Antiporter Super Family AT3G17630 63.8 5.7e-275 944.1
Car16g00507 . 5 779 Antiporter Super Family AT3G17630 63.9 1.9e-270 929.1
Car16g00506 . 812 1577 Antiporter Super Family AT3G17630 63.7 1.6e-269 926.0
Car04g00657 . 1 692 Antiporter Super Family AT3G17630 60.9 3.6e-229 792.0
Car03g00383 . 2 808 Antiporter Super Family AT3G17630 51.6 1.9e-206 716.5
Car16g00506 . 3 777 Antiporter Super Family AT1G64170 58.0 6.0e-240 827.8
Car04g00658 . 11 766 Antiporter Super Family AT1G64170 58.2 1.2e-235 813.5
Car16g00507 . 10 789 Antiporter Super Family AT1G64170 56.4 1.1e-230 797.0
Car04g00657 . 1 694 Antiporter Super Family AT1G64170 54.5 3.9e-199 692.2
Car20g00913 . 10 809 Antiporter Super Family AT2G13620 71.2 0.0e+00 1132.1
Car02g00450 . 10 790 Antiporter Super Family AT2G13620 71.1 0.0e+00 1111.3
Car16g00506 . 3 777 Antiporter Super Family AT1G64170 58.0 6.0e-240 827.8
Car04g00658 . 11 766 Antiporter Super Family AT1G64170 58.2 1.2e-235 813.5
Car16g00507 . 10 789 Antiporter Super Family AT1G64170 56.4 1.1e-230 797.0
Car04g00657 . 1 694 Antiporter Super Family AT1G64170 54.5 3.9e-199 692.2
Car04g00658 . 1 766 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Car16g00506 . 11 796 Antiporter Super Family AT4G23700 64.3 3.9e-287 984.6
Car16g00507 . 1 779 Antiporter Super Family AT4G23700 63.8 3.3e-278 954.9
Car04g00657 . 1 692 Antiporter Super Family AT4G23700 62.3 2.3e-247 852.4
Car16g00507 . 1 797 Antiporter Super Family AT5G41610 68.4 6.3e-306 1047.0
Car04g00658 . 1 766 Antiporter Super Family AT5G41610 67.2 1.6e-296 1015.8
Car16g00506 . 1 777 Antiporter Super Family AT5G41610 66.5 1.5e-294 1009.2
Car04g00657 . 1 694 Antiporter Super Family AT5G41610 66.3 2.3e-260 895.6
Car03g00383 . 8 818 Antiporter Super Family AT5G41610 51.2 1.4e-209 726.9
Car04g00658 . 4 766 Antiporter Super Family AT3G17630 63.8 5.7e-275 944.1
Car16g00507 . 5 779 Antiporter Super Family AT3G17630 63.9 1.9e-270 929.1
Car16g00506 . 812 1577 Antiporter Super Family AT3G17630 63.7 1.6e-269 926.0
Car04g00657 . 1 692 Antiporter Super Family AT3G17630 60.9 3.6e-229 792.0
Car03g00383 . 2 808 Antiporter Super Family AT3G17630 51.6 1.9e-206 716.5
Car03g00383 . 75 828 Antiporter Super Family AT3G53720 67.4 1.8e-278 955.7
Car07g00960 . 76 810 Antiporter Super Family AT3G53720 59.0 4.4e-232 801.6
Car16g00507 . 83 779 Antiporter Super Family AT3G53720 50.9 7.3e-187 651.4
Car04g00658 . 83 766 Antiporter Super Family AT3G53720 50.2 4.9e-183 638.6
Car16g00506 . 83 774 Antiporter Super Family AT3G53720 50.1 4.9e-183 638.6
Car17g00919 . 47 790 Antiporter Super Family AT3G52080 54.1 9.2e-233 803.9
Car08g00430 . 47 772 Antiporter Super Family AT3G52080 53.7 1.5e-227 786.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00913 Car_Chr20 FPKM 1.124362 1.189438 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0