Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00933 ATGGCCGATGCTGAGGATATCCAGCCACTTGTTTGTGATAATGGAACCGGAATGGTGAAGGCAGGATTTGCTGGTGATGATGCTCCCAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGACACACCGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTACGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACTTTCTACAATGAGCTACGTGTTGCACCAGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCCATGTATGTTGCCATTCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGGACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCGGGTCGTGATCTAACTGATGCTTTAATGAAGATTCTCACCGAGAGAGGGTACATGTTCACAACCACTGCCGAGCGGGAAATTGTCCGTGACATGAAAGAGAAGCTGGCTTATGTTGCACTTGACTACGAGCAGGAACTCGAGACTGCCAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACTATTGGAGCTGAGAGATTCCGATGCCCTGAAGTTCTTTTCCAGCCATCTCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACTTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGCAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATTGCCGACCGAATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTCGTCGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGCGAGTATGACGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAG 1134 47.44 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10188237 10189649 + Carg24328-RA Car20g00933 168792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00933 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Car20g00933 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Car20g00933 377 Gene3D - 10 371 - -
Car20g00933 377 PRINTS Actin signature 28 37 IPR004000 -
Car20g00933 377 PRINTS Actin signature 51 62 IPR004000 -
Car20g00933 377 PRINTS Actin signature 63 85 IPR004000 -
Car20g00933 377 PRINTS Actin signature 117 130 IPR004000 -
Car20g00933 377 PRINTS Actin signature 142 161 IPR004000 -
Car20g00933 377 PRINTS Actin signature 238 254 IPR004000 -
Car20g00933 377 Gene3D - 140 340 - -
Car20g00933 377 PANTHER ACTIN 1 376 IPR004000 -
Car20g00933 377 SMART actin_3 7 377 IPR004000 -
Car20g00933 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Car20g00933 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Car20g00933 377 PANTHER ACTIN 1 376 - -
Car20g00933 377 Pfam Actin 5 377 IPR004000 -
Car20g00933 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Car20g00933 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Car20g00933 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01209 Car-Chr11:9827252 Car20g00933 Car-Chr20:10188237 0 dispersed
Car15g00367 Car-Chr15:1924229 Car20g00933 Car-Chr20:10188237 0 dispersed
Car19g00231 Car-Chr19:2313086 Car20g00933 Car-Chr20:10188237 0 dispersed
Car02g00437 Car-Chr2:3455942 Car20g00933 Car-Chr20:10188237 0 wgd
Car20g00933 Car-Chr20:10188237 Car03g00968 Car-Chr3:7490909 0 wgd
Car20g00933 Car-Chr20:10188237 Car07g00770 Car-Chr7:4019537 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00933 K10355 - csv:101215469 758.059