Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00941 ATGGCGAAATCACCGGAAGATGAACATCCACACAAGGCTTTTGGTTGGGCTGCTCGAGATCCTTCCGGCTTACTCTCCCCTTTCCATTTCTCTCGAAGGGAAAATGGTGATGATGATGTCTCTATCAAAATCCTTTACTGTGGGGTTTGCCACTCTGATTTGCATATGCTCAAGAATGACTGGGGGGCAACAGATTATCCTATAATTGTTGGTGTTGTGACTTCTGTTGGTAAAAATGTGAAGAAATTCAAAGCAGGCGATGAAGTTGGGGTTGGTGTCATTGTTGGATCTTGTAGAAACTGTGAAAATTGTAAACAAGACTTGGAGAGTTACTGTCCCAAGATGGAATATACATACAATTCTCCTGCAATCGATGGATCGAAGAATTACGGTGGCTATTCCGACAAGATCGTTGTCGATCAACATTTTGTTGTTCGATTTCCTAAGAACTTAGCTCTTGATGCTGGGGCTCCTCTCCTATGTGCTGGAATTACTGTTTATAGTCCAATGAAATACTTTGGAATGACTGAACCTGGTAAGCATTTGGGTGTGGCTGGACTTGGCGGGCTTGGTCATGTTGCTGTTAAGTTTGGCAAGGCATTTGGGTTGAAAGTTACTGTTATTAGTACCTCTCCTAGGAAGAAGGAGGAAGCAATCGACAGGCTCGGGGCCGATGCTTTCGTTGTATCGAGTGATCCCGATCAATTGAAGGCTGCCATGGGAACTATGGATTACATTTTGGACACAATATCTGCTGTTCATGCTCTTGATCCATTGATTTGTCTGCTAAACCTCAACGGAAAGTTGGTCGCGGTCGGGTTACCTAACAAACCAGTTGAACTATCGCTCGGGTTTCTAGTCTCTGGAAGGAGATTGATTGCTGGAAGCAACTTTGGTGGACTGAAAGAGACACAAGAGATGTTGGATTTCTGTGGCAAACACAACATTACAGCTGATATTGAGCTCATTAAGATGGATGCCATTAACTCGGCTATCGAAAGGCTCGGGAAAGCTGATGTTAAATATCGGTTCGTGATCGACATCGAAAACTCGTTCAAATCGACGCCCATTTTGCCCCAAAAACACTGTAAATCGAACTCTGGAATCTCAAATCCGACGCTAAAATGGCGAAATCTCCAGAAGATGAACACCCAAACAAGGCTTTTGGATGGGCTGCTCGAGATACATCCGGTTTACTCTCTCCATTTCATTTCTCTCGAAGATAATGGTGCTAATGATGTGAGTATCAAAATCCTTTACTGTGGGGTTTGCCATTCTGATCTGCACTTGCTCAAGAATGATTGGGGTATCACAAATTATCCAATAGTCCCAGGGCATGAGATTGTTGGTGTTGTGACCTCTGTTGGGAATAATGTGAAGAAATTCAAAGCGGGCGATCAAGTTGGGGTTGGTGTCATAGTTGGATCTTGCAAAAGTTGTGAGAATTGTGATCAGGACTTGGAGAGTTACTGCCCCAAGATGATATATACTTATAACTCACATTCATATGATGGAGTGAAGAATTATGGTGGTTATTCTGATAAGATTGTCGTCGATCAGCATTTCGTGCTCCGATTTCCCGACAACTTACCTCTTGATGCTGGAGCTCCACTTCTTTGTGCTGGAATCACAGTTTATAGTCCTATGAAATACTATGGCATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACTGCTGCCATGGGGACGATGGATTATATTATCGACACTGTATCCGCTATCCATGCTCTTGCTCCGTTGCTCAGCCTGCTAAAGCTGAATGGAAAGTTGGTCACTGTGGGTTTGCCTAACAAGCCTCTAGAGCTGCCAGTTGTTTCTCTAGTTCTTGGCAGGAGGATGGTTGGTGGTAGCAACTTTGGAGGGCTGAAAGAGACACAAGAGATGTTGGATTTCTGTGCTAAGAACAACATCACTGCAGATATTGAACTCATTCAGATGGACGACATTAACTCGGCCATCGAAAGGCTTGCAAAAGCTGATGTTCGATATCGGTTTGTGATCGACATCGGAAACTCCTTGAAATAG 2106 43.83 MAKSPEDEHPHKAFGWAARDPSGLLSPFHFSRRENGDDDVSIKILYCGVCHSDLHMLKNDWGATDYPIIVGVVTSVGKNVKKFKAGDEVGVGVIVGSCRNCENCKQDLESYCPKMEYTYNSPAIDGSKNYGGYSDKIVVDQHFVVRFPKNLALDAGAPLLCAGITVYSPMKYFGMTEPGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFVVSSDPDQLKAAMGTMDYILDTISAVHALDPLICLLNLNGKLVAVGLPNKPVELSLGFLVSGRRLIAGSNFGGLKETQEMLDFCGKHNITADIELIKMDAINSAIERLGKADVKYRFVIDIENSFKSTPILPQKHCKSNSGISNPTLKWRNLQKMNTQTRLLDGLLEIHPVYSLHFISLEDNGANDVSIKILYCGVCHSDLHLLKNDWGITNYPIVPGHEIVGVVTSVGNNVKKFKAGDQVGVGVIVGSCKSCENCDQDLESYCPKMIYTYNSHSYDGVKNYGGYSDKIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTAAMGTMDYIIDTVSAIHALAPLLSLLKLNGKLVTVGLPNKPLELPVVSLVLGRRMVGGSNFGGLKETQEMLDFCAKNNITADIELIQMDDINSAIERLAKADVRYRFVIDIGNSLK 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10326946 10335850 + Carg27411-RA Car20g00941 168800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00941 701 Pfam Alcohol dehydrogenase GroES-like domain 412 524 IPR013154 -
Car20g00941 701 Pfam Alcohol dehydrogenase GroES-like domain 38 146 IPR013154 -
Car20g00941 701 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 445 459 IPR002328 GO:0008270|GO:0016491
Car20g00941 701 Pfam Zinc-binding dehydrogenase 189 310 IPR013149 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00941 K00083 CAD; cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] - tss:122651163 831.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00441 Car-Chr4:2500572 Car20g00941 Car-Chr20:10326946 3.59E-87 dispersed
Car11g01119 Car-Chr11:8903347 Car20g00941 Car-Chr20:10326946 5.50E-53 dispersed
Car16g00304 Car-Chr16:1873847 Car20g00941 Car-Chr20:10326946 1.86E-84 dispersed
Car20g00941 Car-Chr20:10326946 Car05g00880 Car-Chr5:8578040 6.40E-09 dispersed
Car01g01557 Car-Chr1:13001709 Car20g00941 Car-Chr20:10326946 1.08E-101 transposed
Car02g00709 Car-Chr2:5244869 Car20g00941 Car-Chr20:10326946 3.39E-74 transposed
Car03g00777 Car-Chr3:6486582 Car20g00941 Car-Chr20:10326946 2.26E-118 transposed
Car02g00411 Car-Chr2:3216163 Car20g00941 Car-Chr20:10326946 1.48E-170 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car07g00392 . 2 491 Monolignol Biosynthesis Gene Families AT4G36220 69.9 3.2e-210 728.4
Car11g00908 . 15 501 Monolignol Biosynthesis Gene Families AT4G36220 66.5 6.2e-198 687.6
Car14g00459 . 5 508 Monolignol Biosynthesis Gene Families AT2G40890 79.2 2.7e-246 848.2
Car09g00060 CCT 11 429 Monolignol Biosynthesis Gene Families AT1G20490 58.7 3.7e-138 488.8
Car01g01572 CCT 8 424 Monolignol Biosynthesis Gene Families AT1G20490 55.9 2.5e-134 476.1
Car09g00060 CCT 11 459 Monolignol Biosynthesis Gene Families AT1G20510 74.1 1.6e-189 659.4
Car01g01572 CCT 8 454 Monolignol Biosynthesis Gene Families AT1G20510 73.9 6.2e-189 657.5
Car01g00468 . 1 543 Monolignol Biosynthesis Gene Families AT4G05160 66.3 1.9e-213 739.2
Car14g00203 . 5 581 Monolignol Biosynthesis Gene Families AT4G05160 59.1 5.0e-190 661.4
Car13g00641 CST 9 557 Monolignol Biosynthesis Gene Families AT5G63380 63.0 5.0e-193 671.4
Car18g00217 CST 15 561 Monolignol Biosynthesis Gene Families AT5G63380 63.1 5.5e-192 667.9
Car09g00060 CCT 11 459 Monolignol Biosynthesis Gene Families AT1G20510 74.1 1.6e-189 659.4
Car01g01572 CCT 8 454 Monolignol Biosynthesis Gene Families AT1G20510 73.9 6.2e-189 657.5
Car01g01572 CCT 8 547 Monolignol Biosynthesis Gene Families AT1G20500 62.9 1.7e-198 689.5
Car09g00060 CCT 11 536 Monolignol Biosynthesis Gene Families AT1G20500 63.4 2.4e-192 669.1
Car09g00060 CCT 11 429 Monolignol Biosynthesis Gene Families AT1G20490 58.7 3.7e-138 488.8
Car01g01572 CCT 8 424 Monolignol Biosynthesis Gene Families AT1G20490 55.9 2.5e-134 476.1
Car01g01572 CCT 8 547 Monolignol Biosynthesis Gene Families AT1G20480 62.4 2.0e-197 686.0
Car09g00060 CCT 11 536 Monolignol Biosynthesis Gene Families AT1G20480 62.8 6.1e-191 664.5
Car18g00637 . 66 597 Monolignol Biosynthesis Gene Families AT1G62940 73.1 4.6e-228 787.7
Car09g00060 CCT 11 481 Monolignol Biosynthesis Gene Families AT5G38120 59.6 9.3e-156 547.4
Car01g01572 CCT 8 476 Monolignol Biosynthesis Gene Families AT5G38120 59.2 3.5e-155 545.4
Car19g00158 . 33 573 Monolignol Biosynthesis Gene Families AT4G19010 60.1 1.2e-186 650.2
Car05g00611 . 7 492 Monolignol Biosynthesis Gene Families AT1G51680 61.7 2.3e-179 625.9
Car05g00611 . 8 457 Monolignol Biosynthesis Gene Families AT3G21240 62.0 1.1e-164 577.0
Car05g00611 . 12 438 Monolignol Biosynthesis Gene Families AT1G65060 60.0 5.1e-149 525.0
Car05g00611 . 8 387 Monolignol Biosynthesis Gene Families AT3G21230 53.2 6.7e-116 414.8
Car17g00855 . 1 430 Monolignol Biosynthesis Gene Families AT5G48930 77.8 4.4e-205 711.1
Car08g00496 . 1 411 Monolignol Biosynthesis Gene Families AT5G48930 76.8 8.6e-193 670.2
Car14g00459 . 5 508 Monolignol Biosynthesis Gene Families AT2G40890 79.2 2.7e-246 848.2
Car19g00457 . 9 135 Monolignol Biosynthesis Gene Families AT4G34050 89.8 6.7e-61 231.5
Car04g00598 . 74 294 Monolignol Biosynthesis Gene Families AT3G61990 72.9 3.6e-86 315.5
Car04g00598 . 74 282 Monolignol Biosynthesis Gene Families AT3G62000 73.2 1.2e-83 307.4
Car19g00457 . 23 135 Monolignol Biosynthesis Gene Families AT4G26220 64.6 7.7e-39 157.9
Car17g00848 . 99 322 Monolignol Biosynthesis Gene Families AT1G15950 82.1 1.6e-103 372.9
Car14g00956 . 100 322 Monolignol Biosynthesis Gene Families AT1G15950 71.7 2.2e-92 335.9
Car14g00957 . 100 321 Monolignol Biosynthesis Gene Families AT1G15950 72.1 1.1e-91 333.6
Car14g00958 . 100 321 Monolignol Biosynthesis Gene Families AT1G15950 68.5 6.8e-86 314.3
Car01g00159 . 377 564 Monolignol Biosynthesis Gene Families AT1G15950 57.8 5.6e-64 241.5
Car17g00848 . 1 276 Monolignol Biosynthesis Gene Families AT1G80820 75.0 3.9e-119 424.9
Car14g00957 . 8 275 Monolignol Biosynthesis Gene Families AT1G80820 75.1 3.1e-116 415.2
Car14g00956 . 9 276 Monolignol Biosynthesis Gene Families AT1G80820 73.2 4.5e-115 411.4
Car14g00958 . 9 275 Monolignol Biosynthesis Gene Families AT1G80820 71.3 1.4e-108 389.8
Car01g00159 . 286 518 Monolignol Biosynthesis Gene Families AT1G80820 62.8 1.6e-88 323.2
Car07g00392 . 2 491 Monolignol Biosynthesis Gene Families AT4G36220 69.9 3.2e-210 728.4
Car11g00908 . 15 501 Monolignol Biosynthesis Gene Families AT4G36220 66.5 6.2e-198 687.6
Car07g00392 . 1 492 Monolignol Biosynthesis Gene Families AT5G04330 58.8 6.6e-168 587.8
Car11g00908 . 27 501 Monolignol Biosynthesis Gene Families AT5G04330 59.1 5.6e-167 584.7
Car18g01255 . 5 374 Monolignol Biosynthesis Gene Families AT5G54160 72.4 1.7e-154 542.7
Car02g00411 . 1 284 Monolignol Biosynthesis Gene Families AT4G39330 73.6 4.1e-128 454.9
Car20g00941 . 1 296 Monolignol Biosynthesis Gene Families AT4G39330 70.8 2.0e-127 452.6
Car03g00777 . 1 301 Monolignol Biosynthesis Gene Families AT4G39330 62.1 2.8e-113 405.6
Car01g01557 . 8 304 Monolignol Biosynthesis Gene Families AT4G39330 56.2 2.3e-99 359.4
Car02g00709 . 12 298 Monolignol Biosynthesis Gene Families AT4G39330 50.7 1.4e-75 280.4
Car11g01119 . 12 231 Monolignol Biosynthesis Gene Families AT4G39330 51.4 1.2e-66 250.8
Car04g00441 . 1 355 Monolignol Biosynthesis Gene Families AT3G19450 75.3 8.9e-159 557.0
Car16g00304 . 1 357 Monolignol Biosynthesis Gene Families AT3G19450 73.7 7.6e-158 553.9
Car02g00411 . 1 339 Monolignol Biosynthesis Gene Families AT3G19450 52.2 6.7e-106 381.3
Car03g00777 . 11 356 Monolignol Biosynthesis Gene Families AT3G19450 52.3 1.5e-102 370.2
Car11g01119 . 1 241 Monolignol Biosynthesis Gene Families AT3G19450 72.3 1.3e-101 367.1
Car03g00777 . 4 294 Monolignol Biosynthesis Gene Families AT4G37970 61.5 5.9e-108 387.9
Car02g00411 . 1 277 Monolignol Biosynthesis Gene Families AT4G37970 60.3 6.9e-101 364.4
Car20g00941 . 4 292 Monolignol Biosynthesis Gene Families AT4G37970 57.1 9.4e-98 354.0
Car01g01557 . 14 294 Monolignol Biosynthesis Gene Families AT4G37970 54.8 2.2e-91 332.8
Car16g00304 . 2 291 Monolignol Biosynthesis Gene Families AT4G37970 50.7 4.7e-81 298.5
Car03g00777 . 11 294 Monolignol Biosynthesis Gene Families AT4G37980 71.8 9.6e-119 423.7
Car02g00411 . 1 280 Monolignol Biosynthesis Gene Families AT4G37980 64.3 4.2e-106 381.7
Car20g00941 . 12 295 Monolignol Biosynthesis Gene Families AT4G37980 59.5 6.1e-97 351.3
Car01g01557 . 14 294 Monolignol Biosynthesis Gene Families AT4G37980 55.9 8.0e-89 324.3
Car16g00304 . 7 288 Monolignol Biosynthesis Gene Families AT4G37980 52.3 8.8e-80 294.3
Car04g00441 . 1 282 Monolignol Biosynthesis Gene Families AT4G37980 51.1 3.7e-78 288.9
Car02g00709 . 8 280 Monolignol Biosynthesis Gene Families AT4G37980 50.2 9.5e-74 274.2
Car03g00777 . 11 360 Monolignol Biosynthesis Gene Families AT4G37990 70.9 4.7e-144 508.1
Car02g00411 . 1 341 Monolignol Biosynthesis Gene Families AT4G37990 68.3 1.2e-136 483.4
Car20g00941 . 12 358 Monolignol Biosynthesis Gene Families AT4G37990 61.6 4.9e-125 444.9
Car01g01557 . 14 354 Monolignol Biosynthesis Gene Families AT4G37990 57.5 6.6e-114 407.9
Car04g00441 . 7 356 Monolignol Biosynthesis Gene Families AT4G37990 53.4 1.5e-105 380.2
Car16g00304 . 12 356 Monolignol Biosynthesis Gene Families AT4G37990 53.0 1.1e-103 374.0
Car11g01119 . 7 239 Monolignol Biosynthesis Gene Families AT4G37990 50.6 7.9e-67 251.5
Car04g00441 . 1 355 Monolignol Biosynthesis Gene Families AT4G34230 77.5 1.2e-163 573.2
Car16g00304 . 1 355 Monolignol Biosynthesis Gene Families AT4G34230 74.6 5.1e-159 557.8
Car11g01119 . 1 259 Monolignol Biosynthesis Gene Families AT4G34230 56.1 2.5e-105 379.4
Car02g00411 . 1 339 Monolignol Biosynthesis Gene Families AT4G34230 50.7 5.2e-103 371.7
Car02g00411 . 1 339 Monolignol Biosynthesis Gene Families AT2G21730 70.1 4.2e-143 505.0
Car20g00941 . 11 351 Monolignol Biosynthesis Gene Families AT2G21730 67.2 8.4e-136 480.7
Car03g00777 . 12 361 Monolignol Biosynthesis Gene Families AT2G21730 61.4 1.1e-130 463.8
Car01g01557 . 14 356 Monolignol Biosynthesis Gene Families AT2G21730 57.8 3.9e-117 418.7
Car04g00441 . 6 357 Monolignol Biosynthesis Gene Families AT2G21730 51.1 3.6e-102 369.0
Car16g00304 . 12 357 Monolignol Biosynthesis Gene Families AT2G21730 50.9 1.0e-101 367.5
Car11g01119 . 7 231 Monolignol Biosynthesis Gene Families AT2G21730 51.1 9.1e-66 248.1
Car02g00411 . 1 339 Monolignol Biosynthesis Gene Families AT2G21890 69.7 7.8e-142 500.7
Car20g00941 . 11 351 Monolignol Biosynthesis Gene Families AT2G21890 66.3 1.0e-133 473.8
Car03g00777 . 12 361 Monolignol Biosynthesis Gene Families AT2G21890 61.0 5.2e-130 461.5
Car01g01557 . 14 356 Monolignol Biosynthesis Gene Families AT2G21890 57.4 6.7e-117 417.9
Car04g00441 . 6 357 Monolignol Biosynthesis Gene Families AT2G21890 51.3 2.5e-103 372.9
Car16g00304 . 12 357 Monolignol Biosynthesis Gene Families AT2G21890 51.0 9.3e-103 370.9
Car11g01119 . 7 231 Monolignol Biosynthesis Gene Families AT2G21890 51.3 6.3e-67 251.9
Car02g00709 . 2 355 Monolignol Biosynthesis Gene Families AT1G72680 75.1 4.2e-161 564.7
Car02g00411 . 1 341 Monolignol Biosynthesis Gene Families AT1G72680 52.8 3.7e-101 365.5
Car20g00941 . 16 353 Monolignol Biosynthesis Gene Families AT1G72680 53.4 2.3e-98 356.3
Car09g00060 CCT 11 459 Monolignol Biosynthesis Gene Families AT1G20510 74.1 1.6e-189 659.4
Car01g01572 CCT 8 454 Monolignol Biosynthesis Gene Families AT1G20510 73.9 6.2e-189 657.5
Car01g01572 CCT 8 547 Monolignol Biosynthesis Gene Families AT1G20500 62.9 1.7e-198 689.5
Car09g00060 CCT 11 536 Monolignol Biosynthesis Gene Families AT1G20500 63.4 2.4e-192 669.1
Car09g00060 CCT 11 429 Monolignol Biosynthesis Gene Families AT1G20490 58.7 3.7e-138 488.8
Car01g01572 CCT 8 424 Monolignol Biosynthesis Gene Families AT1G20490 55.9 2.5e-134 476.1
Car01g01572 CCT 8 547 Monolignol Biosynthesis Gene Families AT1G20480 62.4 2.0e-197 686.0
Car09g00060 CCT 11 536 Monolignol Biosynthesis Gene Families AT1G20480 62.8 6.1e-191 664.5
Car18g00637 . 66 597 Monolignol Biosynthesis Gene Families AT1G62940 73.1 4.6e-228 787.7
Car19g00158 . 33 573 Monolignol Biosynthesis Gene Families AT4G19010 60.1 1.2e-186 650.2
Car01g00468 . 1 543 Monolignol Biosynthesis Gene Families AT4G05160 66.3 1.9e-213 739.2
Car14g00203 . 5 581 Monolignol Biosynthesis Gene Families AT4G05160 59.1 5.0e-190 661.4
Car13g00641 CST 9 557 Monolignol Biosynthesis Gene Families AT5G63380 63.0 5.0e-193 671.4
Car18g00217 CST 15 561 Monolignol Biosynthesis Gene Families AT5G63380 63.1 5.5e-192 667.9
Car09g00060 CCT 11 481 Monolignol Biosynthesis Gene Families AT5G38120 59.6 9.3e-156 547.4
Car01g01572 CCT 8 476 Monolignol Biosynthesis Gene Families AT5G38120 59.2 3.5e-155 545.4
Car09g00018 . 4 351 Monolignol Biosynthesis Gene Families AT1G76470 52.1 5.8e-93 338.2
Car04g00812 . 7 325 Monolignol Biosynthesis Gene Families AT2G02400 70.2 3.4e-138 488.4
Car09g00018 . 7 352 Monolignol Biosynthesis Gene Families AT2G33590 59.7 1.2e-111 400.2
Car09g00018 . 4 352 Monolignol Biosynthesis Gene Families AT2G33600 58.0 2.0e-109 392.9
Car13g00020 . 5 326 Monolignol Biosynthesis Gene Families AT5G58490 69.3 1.6e-135 479.6
Car06g00358 . 1 361 Monolignol Biosynthesis Gene Families AT3G53140 71.9 4.2e-153 538.1
Car18g01255 . 189 372 Monolignol Biosynthesis Gene Families AT5G37170 51.6 3.0e-49 192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000429 7 3 4 6 6 3 3 3 3 2 3 3 3 3 3 3 3 7 2 3 3 3 2 3 4 3 2 4 4 4 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00941 Car_Chr20 FPKM 123.171654 115.252014 75.521881 75.219208 71.75592 89.122978 71.199348 60.482731 73.271866 63.748859