Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00941 ATGGCGAAATCACCGGAAGATGAACATCCACACAAGGCTTTTGGTTGGGCTGCTCGAGATCCTTCCGGCTTACTCTCCCCTTTCCATTTCTCTCGAAGGGAAAATGGTGATGATGATGTCTCTATCAAAATCCTTTACTGTGGGGTTTGCCACTCTGATTTGCATATGCTCAAGAATGACTGGGGGGCAACAGATTATCCTATAATTGTTGGTGTTGTGACTTCTGTTGGTAAAAATGTGAAGAAATTCAAAGCAGGCGATGAAGTTGGGGTTGGTGTCATTGTTGGATCTTGTAGAAACTGTGAAAATTGTAAACAAGACTTGGAGAGTTACTGTCCCAAGATGGAATATACATACAATTCTCCTGCAATCGATGGATCGAAGAATTACGGTGGCTATTCCGACAAGATCGTTGTCGATCAACATTTTGTTGTTCGATTTCCTAAGAACTTAGCTCTTGATGCTGGGGCTCCTCTCCTATGTGCTGGAATTACTGTTTATAGTCCAATGAAATACTTTGGAATGACTGAACCTGGTAAGCATTTGGGTGTGGCTGGACTTGGCGGGCTTGGTCATGTTGCTGTTAAGTTTGGCAAGGCATTTGGGTTGAAAGTTACTGTTATTAGTACCTCTCCTAGGAAGAAGGAGGAAGCAATCGACAGGCTCGGGGCCGATGCTTTCGTTGTATCGAGTGATCCCGATCAATTGAAGGCTGCCATGGGAACTATGGATTACATTTTGGACACAATATCTGCTGTTCATGCTCTTGATCCATTGATTTGTCTGCTAAACCTCAACGGAAAGTTGGTCGCGGTCGGGTTACCTAACAAACCAGTTGAACTATCGCTCGGGTTTCTAGTCTCTGGAAGGAGATTGATTGCTGGAAGCAACTTTGGTGGACTGAAAGAGACACAAGAGATGTTGGATTTCTGTGGCAAACACAACATTACAGCTGATATTGAGCTCATTAAGATGGATGCCATTAACTCGGCTATCGAAAGGCTCGGGAAAGCTGATGTTAAATATCGGTTCGTGATCGACATCGAAAACTCGTTCAAATCGACGCCCATTTTGCCCCAAAAACACTGTAAATCGAACTCTGGAATCTCAAATCCGACGCTAAAATGGCGAAATCTCCAGAAGATGAACACCCAAACAAGGCTTTTGGATGGGCTGCTCGAGATACATCCGGTTTACTCTCTCCATTTCATTTCTCTCGAAGATAATGGTGCTAATGATGTGAGTATCAAAATCCTTTACTGTGGGGTTTGCCATTCTGATCTGCACTTGCTCAAGAATGATTGGGGTATCACAAATTATCCAATAGTCCCAGGGCATGAGATTGTTGGTGTTGTGACCTCTGTTGGGAATAATGTGAAGAAATTCAAAGCGGGCGATCAAGTTGGGGTTGGTGTCATAGTTGGATCTTGCAAAAGTTGTGAGAATTGTGATCAGGACTTGGAGAGTTACTGCCCCAAGATGATATATACTTATAACTCACATTCATATGATGGAGTGAAGAATTATGGTGGTTATTCTGATAAGATTGTCGTCGATCAGCATTTCGTGCTCCGATTTCCCGACAACTTACCTCTTGATGCTGGAGCTCCACTTCTTTGTGCTGGAATCACAGTTTATAGTCCTATGAAATACTATGGCATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACTGCTGCCATGGGGACGATGGATTATATTATCGACACTGTATCCGCTATCCATGCTCTTGCTCCGTTGCTCAGCCTGCTAAAGCTGAATGGAAAGTTGGTCACTGTGGGTTTGCCTAACAAGCCTCTAGAGCTGCCAGTTGTTTCTCTAGTTCTTGGCAGGAGGATGGTTGGTGGTAGCAACTTTGGAGGGCTGAAAGAGACACAAGAGATGTTGGATTTCTGTGCTAAGAACAACATCACTGCAGATATTGAACTCATTCAGATGGACGACATTAACTCGGCCATCGAAAGGCTTGCAAAAGCTGATGTTCGATATCGGTTTGTGATCGACATCGGAAACTCCTTGAAATAG 2106 43.83 MAKSPEDEHPHKAFGWAARDPSGLLSPFHFSRRENGDDDVSIKILYCGVCHSDLHMLKNDWGATDYPIIVGVVTSVGKNVKKFKAGDEVGVGVIVGSCRNCENCKQDLESYCPKMEYTYNSPAIDGSKNYGGYSDKIVVDQHFVVRFPKNLALDAGAPLLCAGITVYSPMKYFGMTEPGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFVVSSDPDQLKAAMGTMDYILDTISAVHALDPLICLLNLNGKLVAVGLPNKPVELSLGFLVSGRRLIAGSNFGGLKETQEMLDFCGKHNITADIELIKMDAINSAIERLGKADVKYRFVIDIENSFKSTPILPQKHCKSNSGISNPTLKWRNLQKMNTQTRLLDGLLEIHPVYSLHFISLEDNGANDVSIKILYCGVCHSDLHLLKNDWGITNYPIVPGHEIVGVVTSVGNNVKKFKAGDQVGVGVIVGSCKSCENCDQDLESYCPKMIYTYNSHSYDGVKNYGGYSDKIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTAAMGTMDYIIDTVSAIHALAPLLSLLKLNGKLVTVGLPNKPLELPVVSLVLGRRMVGGSNFGGLKETQEMLDFCAKNNITADIELIQMDDINSAIERLAKADVRYRFVIDIGNSLK 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10326946 10335850 + Carg27411-RA Car20g00941 168800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00941 701 Pfam Alcohol dehydrogenase GroES-like domain 412 524 IPR013154 -
Car20g00941 701 Pfam Alcohol dehydrogenase GroES-like domain 38 146 IPR013154 -
Car20g00941 701 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 445 459 IPR002328 GO:0008270|GO:0016491
Car20g00941 701 Pfam Zinc-binding dehydrogenase 189 310 IPR013149 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00441 Car-Chr4:2500572 Car20g00941 Car-Chr20:10326946 3.59E-87 dispersed
Car11g01119 Car-Chr11:8903347 Car20g00941 Car-Chr20:10326946 5.50E-53 dispersed
Car16g00304 Car-Chr16:1873847 Car20g00941 Car-Chr20:10326946 1.86E-84 dispersed
Car20g00941 Car-Chr20:10326946 Car05g00880 Car-Chr5:8578040 6.40E-09 dispersed
Car01g01557 Car-Chr1:13001709 Car20g00941 Car-Chr20:10326946 1.08E-101 transposed
Car02g00709 Car-Chr2:5244869 Car20g00941 Car-Chr20:10326946 3.39E-74 transposed
Car03g00777 Car-Chr3:6486582 Car20g00941 Car-Chr20:10326946 2.26E-118 transposed
Car02g00411 Car-Chr2:3216163 Car20g00941 Car-Chr20:10326946 1.48E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00941 K00083 - tss:122651163 831.632