Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00950 ATGGGTTCCAAATCCCAACTCCTATTGAACCCACAACAAGCTTTGTTTGAAGATCAAGATCATCAAACACCACCAATTTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACCCCTTTGAGAATCCAAATTTCTCAACCTCCAACAATAATAATAATAATTCCGACACCAACCTTAATCTCTCCGAAACCCTACTTTTTTCTTCTATGAATTTGCCCCTCAAGCCCTCCCCTTTCTATGAATTTGCTCCTCCACACCTCCTTTCCTTGCAAACTTCCACTCCAAATCTATGGCCATGGGGAGAGATTGGGAAGAGAAGCAATGAAAATCAATTGGGAATTTCAACAATAAAGATGAAGAAGATCAAAGGAAGAAGAAGAGTTCGAGAGCCAAGATTTTCATTCAAAACCCTAAGCGATGTGGATGTTCTTGATGATGGTTACAAATGGCGGAAGTATGGCCAGAAAGTTGTCAAGAACACACAGCATCCTCGAAGCTATTACCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTGGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCTCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTCTGGTAA 663 40.12 MGSKSQLLLNPQQALFEDQDHQTPPISQMGFFNFPSNPFENPNFSTSNNNNNNSDTNLNLSETLLFSSMNLPLKPSPFYEFAPPHLLSLQTSTPNLWPWGEIGKRSNENQLGISTIKMKKIKGRRRVREPRFSFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10898379 10900505 - Carg27633-RA Car20g00950 168809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00950 220 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car20g00950 220 ProSiteProfiles WRKY domain profile. 138 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00946 Car20g00950 CCT
Car02g00417 Car20g00950 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00609 Car-Chr12:4142433 Car20g00950 Car-Chr20:10898379 1.30E-47 dispersed
Car20g00950 Car-Chr20:10898379 Car17g00350 Car-Chr17:2214403 3.39E-36 dispersed
Car02g00417 Car-Chr2:3278398 Car20g00950 Car-Chr20:10898379 4.91E-51 wgd
Car20g00950 Car-Chr20:10898379 Car03g00946 Car-Chr3:7357790 3.10E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5414 PF03106 WRKY 3.50E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00950 - - cmos:111434882 400.593