Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00959 ATGGCCTCCTCTTCAAATCCCATCTCTCTCCTCCTATTCTTCTCTCTCCTCTTCCTCTTCACCTCGTCCTCCGCCGTTCCGACGGTCGAGGTTTGCCAATCCGCAACCTCCCCGTCCTTCTGCAAATCCTTCCTCCCCTCCTCCTCGGCCTCCGTCCACTCCCATTGTCGCTACACTCTCCATCACGCCTTGGTCCAAGCGCGCACCTTTGTAACCCTCGTTGATCTCCAACTTACCCTATTTCCTTCCCTCTCGGCCCTCCATGATTGCCGCTCCCTCGCCGTGGCCAACCTCGACTTCATATCGAGCACAGTCGACACCGTCAACACCACCACCAATGCCCTTCAGTTTTACCAAGCTGATGAGATGATATCGTTGCTTAGCGCAGTGATCACCAATGTAGATACTTGTCATGATGGCTTAGCAGGCTCAGGCTCGGGCTCGGGCTTGGGCTTGGTTGATAAGGTGGTGAAAGCTATCTCCTTTGATAGACAGCTTTATAGTTTGTACCTTTCTTTGTTCAAAATGGGTTGGGTTTCTAAGAACATGAAGGCTCCTAAGTTGCCAAAAACTAACCATTTTGGGTTCGGGAATGGTCCGTTGAAGCTCAAAATGTCGCCCAAAGACCGCGCCTATTATGAGCGGTTGGTGCATGGGAAGAAGCCGGCGGCTCGAAGGCTTCTTCAGACCAATTATGCTGATGATGGCATTTTGGTCAATGGTGTTGTTGCTGTGGACCAAAATGGAGCATATGACTTCACCACCATCAATGACGCCATTGCGGCAGCTCCGAACAAATCCACCGCTGCGAACGGGTACTTTTTGATATTCGTCACCGCCGGGATTTACATGGAGAGCGTAGTGGTTCCGAAAAGTAAAAAGTACGTGTTGATGATCGGAGAAGGTAACAATAGAACTATCATCACCGGGAACAAGAACGTCGTTGATGGTTCTACCACTTTCAATAGCGCGACCGTCATCGTGGAGGGAACAGGGTTCTTCGGGGCAAACCTAACCATCACCAACACTGCCGGTGCCATCAAACACCAAGCCGTGGCGTTGCGGGTGAGCGCCGACATGACGACGTTCTACAGCTGCATATTCGAAGGATACCAAGACACTCTATACACTCACTCCCTCCGCCAATTCTACCGAGAATGCGACATCTACGGCACAGTCGACTTCATCTTCGGCAACGCCGCTGTCGTCTTACAAAACTGCAACATCTACGCTCGCCTCCCTCTGAGCGGGCAATTCAACGCCCTCACAGCGCAGGGCCGGACCGACCAGAATCAGAACACCGGAATCTTCATTCACAAATGCACCATCAAACCGACACCCGACCTCGCCGCTAGCCCCGCCACCAAGAGCTATTTAGGGCGGCCGTGGAAGGAATTTTCTCGAACAGTTTACATGCAGTCGTTTATCGATGCCTTCATCGACCCTGCAGGGTGGAAGGAGTGGGACGGGACTTTGAATTTGAACACTTCGTATTACGCCGAGTTTGATAACTCCGGGCCGGGTTCCGACACTTCGCGACGGGCACAGTGGGCTGTCGGGGTAATCAACGCCACCGTTGCTAATATCTTCACGGTGTCTGAAATCTTGGCCGGAGATCAATGGCTGCCGCCCACCGCCGTGCCATACAGCGGCGGTTTGATATCATAA 1668 52.58 MASSSNPISLLLFFSLLFLFTSSSAVPTVEVCQSATSPSFCKSFLPSSSASVHSHCRYTLHHALVQARTFVTLVDLQLTLFPSLSALHDCRSLAVANLDFISSTVDTVNTTTNALQFYQADEMISLLSAVITNVDTCHDGLAGSGSGSGLGLVDKVVKAISFDRQLYSLYLSLFKMGWVSKNMKAPKLPKTNHFGFGNGPLKLKMSPKDRAYYERLVHGKKPAARRLLQTNYADDGILVNGVVAVDQNGAYDFTTINDAIAAAPNKSTAANGYFLIFVTAGIYMESVVVPKSKKYVLMIGEGNNRTIITGNKNVVDGSTTFNSATVIVEGTGFFGANLTITNTAGAIKHQAVALRVSADMTTFYSCIFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYARLPLSGQFNALTAQGRTDQNQNTGIFIHKCTIKPTPDLAASPATKSYLGRPWKEFSRTVYMQSFIDAFIDPAGWKEWDGTLNLNTSYYAEFDNSGPGSDTSRRAQWAVGVINATVANIFTVSEILAGDQWLPPTAVPYSGGLIS 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 11106134 11108767 + Carg27065-RA Car20g00959 168818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00959 555 Pfam Pectinesterase 243 539 IPR000070 GO:0030599|GO:0042545
Car20g00959 555 Pfam Plant invertase/pectin methylesterase inhibitor 30 150 IPR006501 GO:0004857
Car20g00959 555 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01033 Car-Chr5:9829928 Car20g00959 Car-Chr20:11106134 0 dispersed
Car20g00959 Car-Chr20:11106134 Car17g01016 Car-Chr17:8060470 8.11E-116 dispersed
Car20g00959 Car-Chr20:11106134 Car17g01015 Car-Chr17:8052657 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00959 K01051 - csv:101216984 866.3