Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00987 ATGGGAATTGTAGCCCAACCTCTTCAATTCTTGTTTTTCACCATTTTTCTGCAACAATTTGAAGAATTTGATTGTGATTCTATGTCACAACAAGACTACCAGCAAGCGGCGGCGGCGGCGGCAGCAGGTTTCTTCACGCCCTTCTCCAATGGCTTTGATAGATCCTCCACTGCCCACCAAGACCCTCAGCAACACTACCAACACATAGCCCACCAGATCCGCAAGGAGAAGCTTAGACTTCAAGGCTTCCACCCGCCGCCTCATCCGCCATCGTTAGTTGGAATTGACGACGACGATGATGACCAATCTGCCGGTGCTGCTGCGCTCCACCACGTCTACGATTCGGCTGGAATTTTATCGGAAATGTTCAATTTTCCTCCGGCTCCACCGCCACCGCCACCGCCACAGACGGAGTTGTATGGGAATCGGGAAGCGATGAACGCAGCTGACTCAGCGGTTGCCATGCAGCTTTTTCTGATGAACCCTAACCCTCGGTCGCCGTCTCCACCGCCGCCGCCACCGGCAGTCTCGTCCACGCTTCACATGCTTCTTCCAAACCCAGGTTCAGGAGGGTCTTTCGGACAATTCGCGTGGGGTGTGGTTCCGGAGCAAGAAACAGGAGACCATTCTTCCTCAAACCCTAATGAAGGCCGTCTTTCGCTGTCGTTGTCATCGTCTTTGGAGGCTGCAAAAGCTGAGGAATTGAGAATGGGTGACAGCGCCAGTGGGTTACTTTATCAAACCCACCATCACCCCCAACATGTTCATGTCGGAATTGGGTCGTCTAATCCACTGGGAGTTGTCAACTTGTTGAGAAACTCAAAGTATGTTAAAGCTGCACAGGAATTATTGGAGGAGTTTTGTAGCGTTGGAAGAGGTCAGTTTAAGAGGAGCAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGACGGCGCCGGAGTCTCTTCCTCCGCCGCAAAAGATCATCAGCCGCAGCCAGCTTTGTCAGCAGCTGATAGAATCGAACACCAAAGGAGGAAGGTCAAACTGTTGTCTATGCTTGATGAGGCATGTAAAATCTTTGTCTATAAATTTGGTGTTGGGAAAATGGAAATGCAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAATTCATTCGAGGAGGTGATGGGGTTGGGGGCAGCGGTGGCATACACGGCGTTGGCGCAGAAGGCGATGTCGAGGCATTTCAGGTGTCTGAAGGACGCAATAGTAGGGCAGCTGAAGCAAAGCTGCGAGATGTTAGGGGACAAAGATGGGGGAAGAGCCTCTGGAATAACAAAGGGAGAGACTCCAAGGCTTAAGCTGTTGGAGCAAAGGCTGAGACAGCAACGAGCCTTCCACCAAATGGGCATCATGGATCAAGAAGCTTGGCGTCCTCAACGCGGCCTCCCCGAACGCTCTGTCAACATCTTGCGCGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCTAGTGATGCTGATAAGCATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAACCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAAGAAGAAGAAGATGATGATGACGAGGAGGATAATACAGATGAGGACACAAAAACCAACCCCCATCAAATTACCTCTAATGCCCTTTCACAAACTCCAACGCCGCCGTCCGACGCCACTCCACATCCACATCCACCACCACCACCACCACCACCACCCAAAGGACTCGATCACACCACCCTAACCCATCCTCCACCCTTCTCGCAAAACCAACAATATTCCTCCCAGGCGCCGCCAACTCCATCGATGGTGGCAAACTGCTTTCCCGCCACCCACTATGATTCAGAGCTGCAGGACACGTGTCGGCGAGTCAGCGTTCTCACTGCACCTGATCATCAATTCGGGACCACAAACACCTCTGCCACATCTGACATCCAGGGGCCCACCACGCTTATAAGGTTCGGGACCACCACTGGTGACGTGTCGCTCACATTAGGTTTACGCCACGCCGGAAATATCCCCGATAAAAACCCTTCTTTCTCCCTGAGATCCGAGTTTGGAGACTGTTAG 2136 51.78 MGIVAQPLQFLFFTIFLQQFEEFDCDSMSQQDYQQAAAAAAAGFFTPFSNGFDRSSTAHQDPQQHYQHIAHQIRKEKLRLQGFHPPPHPPSLVGIDDDDDDQSAGAAALHHVYDSAGILSEMFNFPPAPPPPPPPQTELYGNREAMNAADSAVAMQLFLMNPNPRSPSPPPPPPAVSSTLHMLLPNPGSGGSFGQFAWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSASGLLYQTHHHPQHVHVGIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKRSKSNLPSNSNSHGGDGAGVSSSAAKDHQPQPALSAADRIEHQRRKVKLLSMLDEACKIFVYKFGVGKMEMQVDRRYNHYCEQMQMVVNSFEEVMGLGAAVAYTALAQKAMSRHFRCLKDAIVGQLKQSCEMLGDKDGGRASGITKGETPRLKLLEQRLRQQRAFHQMGIMDQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEEEDDDDEEDNTDEDTKTNPHQITSNALSQTPTPPSDATPHPHPPPPPPPPPKGLDHTTLTHPPPFSQNQQYSSQAPPTPSMVANCFPATHYDSELQDTCRRVSVLTAPDHQFGTTNTSATSDIQGPTTLIRFGTTTGDVSLTLGLRHAGNIPDKNPSFSLRSEFGDC 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 11517710 11521560 + Carg27915-RA Car20g00987 168846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00987 711 MobiDBLite consensus disorder prediction 578 601 - -
Car20g00987 711 ProSiteProfiles 'Homeobox' domain profile. 469 532 IPR001356 GO:0003677
Car20g00987 711 MobiDBLite consensus disorder prediction 561 577 - -
Car20g00987 711 MobiDBLite consensus disorder prediction 540 556 - -
Car20g00987 711 MobiDBLite consensus disorder prediction 296 335 - -
Car20g00987 711 MobiDBLite consensus disorder prediction 604 624 - -
Car20g00987 711 Pfam Associated with HOX 271 419 IPR006563 -
Car20g00987 711 MobiDBLite consensus disorder prediction 296 325 - -
Car20g00987 711 MobiDBLite consensus disorder prediction 691 711 - -
Car20g00987 711 Pfam Homeobox KN domain 489 528 IPR008422 GO:0003677|GO:0006355
Car20g00987 711 MobiDBLite consensus disorder prediction 539 624 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01199 Car-Chr2:8154919 Car20g00987 Car-Chr20:11517710 8.72E-80 dispersed
Car07g00733 Car-Chr7:3779080 Car20g00987 Car-Chr20:11517710 2.50E-171 dispersed
Car15g01122 Car-Chr15:8861237 Car20g00987 Car-Chr20:11517710 1.37E-79 dispersed
Car20g00709 Car-Chr20:4092444 Car20g00987 Car-Chr20:11517710 1.28E-79 dispersed
Car02g00391 Car-Chr2:2948817 Car20g00987 Car-Chr20:11517710 0 wgd
Car20g00987 Car-Chr20:11517710 Car03g00922 Car-Chr3:7251035 8.44E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5419 PF07526 POX 4.80E-48 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00987 - - cmax:111470356 1177.54