Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0009 ATGGGCGAGGCCGTGGTCGTGAGCTCTGAGGATGTGGATGTGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACCACAACGACGATATGGCGGACGCAGAGAGTATGGGCACTCACAGACCTAACAGAGATGGCAGTTCGACTGGGTTTGGGGTCGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTCTGATCATGGAGCATGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATCAGCACTGTTTACAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCGTCCAATGTGAGAACTGACGTTCAAGAAAAGGTTGAAGTCACTTCTGAAAATGAGACTGCAAGCAATCACTCAACTGGTTGTGCTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGATTTTGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCCTAGGCAGGGAAAAGCCTCTCCCAACGACTTCAAGCTACAAAAAGATGAACATCTCATCAATTTGAGTCAAAGATTGTTTATGCATGAAAACGAAACTGGAGGATTGGCAATGAGTTACTATGTCAATACTGATTTACCAATCACACTAAGCATGGGTCTTGAGCCGATCAATGATGGGAGAAATCCTAATATTGCTAGTGAAGTAGGTGATGATAAGGATTTGCTTGCCAACCCATCCAGAGATACAACTGCCTTGGATCATGCCTGTATCAAGTATCCCGATAACTACCAAAAAAGTTCTCCTTCCCACAATTTTGCTGCAAATAATTTCGGCTCTGCTCTTCATTTGGATCTTTCTCTGAGAAGATGTCAACCTAACGATTTTGAGGAACGTGCTACTGGACGGGCAACCCTCAAACATTCTAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCATTGCAATCACTTCAAGCAAAATCAAGCAGTATCTGGGATGAGCAAAAAGAATTTGAAAGTAACCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACCTCTGATGCCATTAATCCTACGCCAAATCTGCAAAAGAGTAATACTTCTATGCCTATGATCACGAGTCAATCTACTCATTCTGAAGTTGCTAAATCAAGTACTTCAGAGACGGTAATCCCTCTTCAAGTTTCAGTGAAAGATTTGATGTCTAATAATCAACGCTCGGGCTCAGGCTATGGCTCTTTACCTCCTCACAACTTCTGCACACAACATGGTAGCCCATTGTCTCCATGCCGAACTTCAGCCACCCATCCAGAACTCATCTTTGGGAAACGGACGGTTTATCCCTCAAACTTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGCATCACAACGTAAGCAGTCCAGCAAGCAGAAAGATAGAAAACTCGGGCCAGTCTGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAATGTATGTTGTGGCAATACAACTCATGTTGGAAGTGTGGGATATCCTAGCACCTGCGGAAGCAACAGCAATTTAGATCGGACTGGGGTTGCAAGAGTTACAGCTGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGAAAAGATAGATGTTATGAGAAAAAGGTCCGTTATGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCTAGAGTGAAGGGACAGTTTGTCCGTAGAGTATGTACTGATCCATTGCCTGCAGAAACCAACGACAATACATCCAACGGTTAG 2106 44.16 MGEAVVVSSEDVDVDVDVDVDYVRLHHNDDMADAESMGTHRPNRDGSSTGFGVGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDVQEKVEVTSENETASNHSTGCAAGVQRNNKNIEKGSDTQSSCTKVDFEAGSKMQENSQPRQGKASPNDFKLQKDEHLINLSQRLFMHENETGGLAMSYYVNTDLPITLSMGLEPINDGRNPNIASEVGDDKDLLANPSRDTTALDHACIKYPDNYQKSSPSHNFAANNFGSALHLDLSLRRCQPNDFEERATGRATLKHSSASAFTRYTFRPLQSLQAKSSSIWDEQKEFESNPEHIGSIAATSTSDAINPTPNLQKSNTSMPMITSQSTHSEVAKSSTSETVIPLQVSVKDLMSNNQRSGSGYGSLPPHNFCTQHGSPLSPCRTSATHPELIFGKRTVYPSNFENHNLEQFLNQHHNVSSPASRKIENSGQSAENQGHISPTTDHSANSNVCCGNTTHVGSVGYPSTCGSNSNLDRTGVARVTAESRNEEALFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVCTDPLPAETNDNTSNG 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62979 67477 - CcPI632755_01g000090.1 Cco01g0009 168871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0009 701 ProSiteProfiles CCT domain profile. 642 684 IPR010402 GO:0005515(InterPro)
Cco01g0009 701 SMART REC_2 66 181 IPR001789 GO:0000160(InterPro)
Cco01g0009 701 CDD psREC_PRR 68 171 - -
Cco01g0009 701 Gene3D - 64 254 - -
Cco01g0009 701 ProSiteProfiles Response regulatory domain profile. 67 185 IPR001789 GO:0000160(InterPro)
Cco01g0009 701 SUPERFAMILY CheY-like 60 191 IPR011006 -
Cco01g0009 701 Pfam CCT motif 642 684 IPR010402 GO:0005515(InterPro)
Cco01g0009 701 MobiDBLite consensus disorder prediction 195 266 - -
Cco01g0009 701 MobiDBLite consensus disorder prediction 195 261 - -
Cco01g0009 701 MobiDBLite consensus disorder prediction 554 584 - -
Cco01g0009 701 PANTHER TWO-COMPONENT RESPONSE REGULATOR 56 248 IPR045279 GO:0009736(InterPro)
Cco01g0009 701 Pfam Response regulator receiver domain 68 179 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0009 Cco-Chr1:62979 Cco04g1069 Cco-Chr4:26178465 5.30E-44 dispersed
Cco01g0009 Cco-Chr1:62979 Cco06g1405 Cco-Chr6:24515754 5.90E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58535 PF00072 Response_reg 7.10E-21 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0009 K12130 - csv:101209788 1235.32