Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0011 ATGAGTAGTCGATTTTCTCGTACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGTAGTTATGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTAAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTATGCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTATGACGGAAGTCCCACCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGCCGTAGTAGAAGCCGGAGCCGGAGCCGGAGCCGTAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTACAAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGCACGAGAAGGAAGTGAATGA 843 46.62 MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 75923 80779 - CcPI632755_01g000110.1 Cco01g0011 168873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0011 280 MobiDBLite consensus disorder prediction 208 234 - -
Cco01g0011 280 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 219 IPR050374 GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cco01g0011 280 MobiDBLite consensus disorder prediction 81 114 - -
Cco01g0011 280 Gene3D - 123 200 IPR012677 -
Cco01g0011 280 SMART rrm1_1 8 78 IPR000504 GO:0003723(InterPro)
Cco01g0011 280 SMART rrm1_1 124 193 IPR000504 GO:0003723(InterPro)
Cco01g0011 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723(InterPro)
Cco01g0011 280 MobiDBLite consensus disorder prediction 199 280 - -
Cco01g0011 280 FunFam serine/arginine-rich splicing factor SR34A-like 123 200 - -
Cco01g0011 280 MobiDBLite consensus disorder prediction 247 269 - -
Cco01g0011 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723(InterPro)
Cco01g0011 280 Pfam RNA recognition motif 125 187 IPR000504 GO:0003723(InterPro)
Cco01g0011 280 Pfam RNA recognition motif 9 76 IPR000504 GO:0003723(InterPro)
Cco01g0011 280 Gene3D - 2 122 IPR012677 -
Cco01g0011 280 SUPERFAMILY RNA-binding domain, RBD 6 193 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0011 K12890 - - csv:101210036 364.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0011 Cco-Chr1:75923 Cco03g1788 Cco-Chr3:32536596 3.90E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g971 . . Bda05g00142 . . . Bma10g01319 . . . . . Car02g00950 . . Cpe05g00577 . . . . . . . . Cla01g00010 Cam01g0010 Cec01g0009 Cco01g0011 Clacu01g0011 Cmu01g0011 Cre09g2494 Cone1ag1018 . . . . Csa05g00007 Chy09g01474 . Blo07g00317 . . . . . . . . Cmo02g01181 Cmo15g01056 . . . . . Cpe13g00338 Bhi12g00700 . . . . . . . . . . . . . . . . Cme09g02022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000386 3 9 3 2 2 3 5 3 3 3 2 3 3 3 4 5 3 7 5 3 3 3 4 3 3 2 3 22 7 3 127