Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0015 ATGCGGAAGCATTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGGGCCCTCCAAATCTGCCACTGCCTGATTCCCAATCTTTTTTCTCTGCGCCCCATCGCACATCTCCCCAGTTCCCGGGCGTCTTTCGACCCCCTCCCGAGCTAGGGTTCCTGGACATTCCCAGAGGCCGAGACATACCGATTTGGAGCATTGACGCCCTCTTTCATCTTTTTATGGAAGCCACGGCCGCAGCGCGTGGTGCTTCTCTCACCATGCATTCTCCCCAGCTCTCCCGCCAGGAATGGCGAGCCGTTGCTGACAATCACTCCGCTCGAGATGCCGCCGATGAGGAAATGGAAAGATCAAAGTTGACACAATCAGATGAAAGGACTATATACGAGGTGCAGCAGGGAAGGGAACCCCTTGATGTCGACTTCTGTTCAATTTCAATAGATGGAAATCCAGATAATGATATTTTGCAGCGGCGGCTCAATGATGTTGCTAGACAAAGAGAGGATCTTCAACAGATGGAGATTGAACTTAGAGCACAAGTTATTGCAAGATCAGAAATATTGGAAATGCAAAAGAGTTTTGATGCTCAAATGAAAGAACACAATAATGCTGCCATCAAGATGCAGGAACAACTATGTGAAAGAGACCAGGCTATTCATGAACTGGAAAGGAAAATAGAAGATAAAGATAGGGAATTGCAATCAATTAAATTAGACAATGAAGCGGCTTGGGCCAAGGATGATCTTCTGCGGGAACAAGATAAAGAAATAGCAACTTACAGGAGAGAACGTGATCATTCTGAAGCTGAAAGAGCTCAGCAAATAAAGCAAATGCATGAACTTCAAGAACACATCCATGAGAAAGAGCGGCAGCTTCTTGAGTTACAGGAGCAGCATAGGATTGCTCAAGAAACCATTTTGTACAAAGATGAACAATTGAGGGAAGCACATGCTTGGATTGCTCGCGTCCAGGAAATGGACGCTTTGCAATCAACTACTAACCATTCCTTACAAGCTGAATTGCGTGAACGTACCGAGCAGTATAACCAGCTATGGCTTGGTTGCCAGCGCCAGTTTGCAGAGATGGAGAGGCTTCACGTGCATGCTATGCAACAACTCCAAATCGAGTTGGCTGATGCAAGGGAAAGAAGTGGGACTTACAATGACGAGTCAAATATATCTCAGACAAGTTCTAAAGATGTATCACAATATGGACAAACCAATGGTAACCAATTAGGTGGAGCAGCTTCAACTGGAAATAATGGGACACCGTCAAATGGAAATCCAGAAAATGCTCCATCTTTTAATTTGACTGGCAATTCATCTATCCAGACTGACCATGTATCCGGTGTTCCAATGGCTCCATCGTCTCTTCTCGGGATGCCACCCTACCTTCCACCTGGGCAGATGGCTGCTCTGCATCCTTTTTTGATGCATCAACCCGGGGTTCCTCATTCTGTACCTTCCCAAGTTCCTCAATCTCACATGGGGCATTTTTCATCATTACCAACTATATCATCCATCCAACCATGGCAGACTGAACAGATTGTTTCAGAGGGTTCCAACGTATCTGTTCAGAATGAACTTCAGTCATCTCAAAATGTCCCGAGCATGATGACATCAAATACCAACTACCCATACGAAATGGGCCAAATGGCTGATAATGGGCAAGCTCTTGAACCAGATTATCTGGATGTTCATTCCAGCAAGAGAAGAGAACTTGATTCAGGGCTTTCCTTATCATCTGGAGAAACACAGCTTGAATCGGTGGATAGAGGATACCAAGTTGCCCCTCAACCTGATACGAGCTTGCAACATGTTACCTCTCAATTTCATGATGCTCTAAGGATTGGTTCCACTTCTATTCAGCATAACAATGAAAAGGATCAAAATAATTTGGGCGCAGGTGATCAAGTCCTCGAGGAGCAAGGTTTAAGTGGGGGAAAATTAAGTCCTGCTGTCAGAACGTTAACCTCTGATTCTTCCTCCGTTCACAATGTAAATGTCAGTGAAATGGTTATCAACAATGCTTCTGCATCTGGGGCGGTTGTACCTGAAGTTTTTGTTTCTTCTGGGCTGAAAATTCCAATGATGGTGGGGAAGACCTCAGAAACTCCACTTCTTGATGAAAGAGCATTATTGGCTTGCATTGTTCGCACTATTCCTGCTGGTGGTAGAATTCAAATAAGTTCAACACTGCCAAATAGGCTGTGCAAGATGCTTGCACCTTTACATTGGCGTGATTATGAGAAGAAGTATGGTAAGCTCGAAGACCTCGTAGCTGTTCATCCAGAATTATTTGTGATTGAGGGCGATTATATTCAGCTTCGCGAAGGAGCACAGAAGACAATAGCAGCTACTGCAGCTTTTGCTAAGGTTGCTGCAGCAGCTGCAGCTTCATCTCATTATTCATCACACTTGCCTTCTGTTGCTATGACCCCAATGGCTCATACTAATCGATCAAAAAGGATTCCATCTGCTGATTCAAAAAACATGAAAGCCGAGAAGACTTCTGTTTTTACTCCAAGTATGGCTAAGGATTCTCCGCAGGGCACACAAATGAAGAATCAACCTAAAAATGGTTTTCATTCGGCTGCTGGTGGAGGTCTATTGAACGGTTTGAAAATGGGTCTGTTCTTGATAGAACATCAAGTGGAAGCAGTCAAAGCTTACCTTCAACTGATGGAAGGTCTAGTGCCAATTTTTCTGGGAAACATCAGGGCAGGATGGCAGCTGCTTCATTGCCTTCAAGAAGATAAGATTACATGA 2781 44.44 MRKHYKKKKKKKKKRKRKRKKGPPNLPLPDSQSFFSAPHRTSPQFPGVFRPPPELGFLDIPRGRDIPIWSIDALFHLFMEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADEEMERSKLTQSDERTIYEVQQGREPLDVDFCSISIDGNPDNDILQRRLNDVARQREDLQQMEIELRAQVIARSEILEMQKSFDAQMKEHNNAAIKMQEQLCERDQAIHELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYRRERDHSEAERAQQIKQMHELQEHIHEKERQLLELQEQHRIAQETILYKDEQLREAHAWIARVQEMDALQSTTNHSLQAELRERTEQYNQLWLGCQRQFAEMERLHVHAMQQLQIELADARERSGTYNDESNISQTSSKDVSQYGQTNGNQLGGAASTGNNGTPSNGNPENAPSFNLTGNSSIQTDHVSGVPMAPSSLLGMPPYLPPGQMAALHPFLMHQPGVPHSVPSQVPQSHMGHFSSLPTISSIQPWQTEQIVSEGSNVSVQNELQSSQNVPSMMTSNTNYPYEMGQMADNGQALEPDYLDVHSSKRRELDSGLSLSSGETQLESVDRGYQVAPQPDTSLQHVTSQFHDALRIGSTSIQHNNEKDQNNLGAGDQVLEEQGLSGGKLSPAVRTLTSDSSSVHNVNVSEMVINNASASGAVVPEVFVSSGLKIPMMVGKTSETPLLDERALLACIVRTIPAGGRIQISSTLPNRLCKMLAPLHWRDYEKKYGKLEDLVAVHPELFVIEGDYIQLREGAQKTIAATAAFAKVAAAAAASSHYSSHLPSVAMTPMAHTNRSKRIPSADSKNMKAEKTSVFTPSMAKDSPQGTQMKNQPKNGFHSAAGGGLLNGLKMGLFLIEHQVEAVKAYLQLMEGLVPIFLGNIRAGWQLLHCLQEDKIT 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100633 113231 - CcPI632755_01g000150.1 Cco01g0015 168877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0015 926 Coils Coil 254 309 - -
Cco01g0015 926 Coils Coil 223 243 - -
Cco01g0015 926 Coils Coil 374 394 - -
Cco01g0015 926 MobiDBLite consensus disorder prediction 1 22 - -
Cco01g0015 926 MobiDBLite consensus disorder prediction 391 453 - -
Cco01g0015 926 PANTHER OS08G0543600 PROTEIN 79 867 - -
Cco01g0015 926 MobiDBLite consensus disorder prediction 387 453 - -
Cco01g0015 926 Coils Coil 157 184 - -
Cco01g0015 926 MobiDBLite consensus disorder prediction 1 51 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0015 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g982 Blo06g01050 Blo15g00076 . . . Bpe07g01028 . . . . Cma02g01147 Cma15g01000 Car02g00948 Car15g00935 . Cpe05g00579 . . . . . . . . Cla01g00014 . . Cco01g0015 Clacu01g0015 Cmu01g0015 . Cone1ag1013 Cone5ag0720 . . . Csa05g00002 Chy09g01478 . . . Bda06g00796 Bda15g00797 . . Bma08g00399 Bma12g01223 . Cmo02g01178 Cmo15g01064 . . . . . Cpe13g00335 Bhi12g00691 . . . Hepe06g0825 . . . . . . . . . . . . Cme09g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004264 2 4 2 2 2 0 2 1 0 1 1 1 1 1 1 2 1 2 2 0 1 1 1 1 1 0 1 5 2 1 42