Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0024 ATGGCATCGGATCCGAACAATACGTTCCCTCTTCACCTTTTTTCAATCTTGATAAATGGCTTCGGATCCGAAGATTGCTGGCTTGTAATCTCTGGAAAGGTTTATGATGTAACTCCCTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCTACGAATGATTTCGAAGATGTTGGGCACAGCGATTCAGCAAGAGAAATGATGGACAAATATTACATCGGAGAAATTGATCCTTCAACAGTTCCTTTGAAGAAGATTTACATTCCATCACAACAAACGCCGTATAACCCAGATAAGACACCCGAGTTTGTGATTAAGATCTTGCAGTTTTTGGTTCCCATATTGATTTTGGGTTTGGCGTTTGCTGTTCGACACTACACCAAGAATGAATAA 417 41.01 MASDPNNTFPLHLFSILINGFGSEDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTPYNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 143104 145076 - CcPI632755_01g000240.1 Cco01g0024 168886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0024 138 SMART Cyt_b5_2 9 85 IPR001199 -
Cco01g0024 138 Gene3D - 19 90 IPR036400 -
Cco01g0024 138 FunFam Cytochrome b5 type B 19 89 - -
Cco01g0024 138 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 1 85 IPR001199 -
Cco01g0024 138 Pfam Cytochrome b5-like Heme/Steroid binding domain 22 84 IPR001199 -
Cco01g0024 138 PRINTS Cytochrome B5 signature 44 58 IPR001199 -
Cco01g0024 138 PRINTS Cytochrome B5 signature 34 44 IPR001199 -
Cco01g0024 138 PRINTS Cytochrome B5 signature 72 84 IPR001199 -
Cco01g0024 138 PRINTS Cytochrome B5 signature 59 66 IPR001199 -
Cco01g0024 138 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 22 91 IPR036400 -
Cco01g0024 138 PANTHER CYTOCHROME B5 23 136 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cco01g0024 138 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 40 47 IPR018506 GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0024 Cco-Chr1:143104 Cco05g0387 Cco-Chr5:3164184 2.90E-47 dispersed
Cco01g0024 Cco-Chr1:143104 Cco05g0071 Cco-Chr5:646435 5.90E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0024 K23490 - csv:101207109 238.81