Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0024 ATGGCATCGGATCCGAACAATACGTTCCCTCTTCACCTTTTTTCAATCTTGATAAATGGCTTCGGATCCGAAGATTGCTGGCTTGTAATCTCTGGAAAGGTTTATGATGTAACTCCCTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCTACGAATGATTTCGAAGATGTTGGGCACAGCGATTCAGCAAGAGAAATGATGGACAAATATTACATCGGAGAAATTGATCCTTCAACAGTTCCTTTGAAGAAGATTTACATTCCATCACAACAAACGCCGTATAACCCAGATAAGACACCCGAGTTTGTGATTAAGATCTTGCAGTTTTTGGTTCCCATATTGATTTTGGGTTTGGCGTTTGCTGTTCGACACTACACCAAGAATGAATAA 417 41.01 MASDPNNTFPLHLFSILINGFGSEDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTPYNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 143104 145076 - CcPI632755_01g000240.1 Cco01g0024 168886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0024 138 SMART Cyt_b5_2 9 85 IPR001199 -
Cco01g0024 138 Gene3D - 19 90 IPR036400 -
Cco01g0024 138 FunFam Cytochrome b5 type B 19 89 - -
Cco01g0024 138 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 1 85 IPR001199 -
Cco01g0024 138 Pfam Cytochrome b5-like Heme/Steroid binding domain 22 84 IPR001199 -
Cco01g0024 138 PRINTS Cytochrome B5 signature 44 58 IPR001199 -
Cco01g0024 138 PRINTS Cytochrome B5 signature 34 44 IPR001199 -
Cco01g0024 138 PRINTS Cytochrome B5 signature 72 84 IPR001199 -
Cco01g0024 138 PRINTS Cytochrome B5 signature 59 66 IPR001199 -
Cco01g0024 138 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 22 91 IPR036400 -
Cco01g0024 138 PANTHER CYTOCHROME B5 23 136 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cco01g0024 138 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 40 47 IPR018506 GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0024 K23490 - - csv:101207109 238.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0024 Cco-Chr1:143104 Cco05g0387 Cco-Chr5:3164184 2.90E-47 dispersed
Cco01g0024 Cco-Chr1:143104 Cco05g0071 Cco-Chr5:646435 5.90E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g991 . . . Bda07g01952 . . . Bma14g02023 . . Cma02g01139 Cma15g01010 Car02g00943 Car15g00942 . Cpe05g00584 . . . . . . . . Cla01g00023 Cam01g0022 Cec01g0020 Cco01g0024 Clacu01g0023 Cmu01g0022 Cre09g2485 Cone1ag1008 Cone5ag0716 . . . Csa05g00025 Chy09g01458 . . Blo09g00007 . . . . . . . Cmo02g01170 Cmo15g01073 . . . . . Cpe13g00327 Bhi12g00682 . . . Hepe06g0817 . . . . . . . . . Lsi09g00003 . . Cme09g02007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156