Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0028 ATGGATACTGCTCATTGGCCACAGTTTGCAGGTGGTGGAGTGGTTGTTAAACAAATGGAAGGAGGTGGATCATCAAGTTCTTCAAAGCCTCCTAATAACAATAACAACAACAACAACAACAATAATAATGGTAATTTGTTGGAGAGAAAAGCAAGACCTCAAAAGGAGCAAGCTTTGAATTGTCCAAGGTGCAATTCGACCAACACAAAATTCTGTTATTACAACAATTACAGCCTGTCTCAACCAAGGTATTTTTGCAAAGCTTGTCGGAGGTATTGGACTGAAGGTGGTTCTTTAAGGAATGTTCCAGTGGGTGGTGGTTCAAGGAAGAACAAAAGATCTTCACTTTCATCATCAGCTGATAAGAAGATCAACGCCTCTGATCAAAACCCTAAAATCATCCATCATGCTCATCAAGATCTCAATCTTGCAATCTTCCCTCCAAACAATAATAATAATAATAATAATAATACTCCTATTCCTTCTTCTACTTCTACTTCTTCTTCTTCTCACCTTTTGGGTTCTTTCATGACGGCGGCACCGGCGGCCGGAGTGTTCAATGGCGGTGGTGGGTTTGGATTGAGCGAGCTGAAGCCATCAAGTTTAAGTTTTTCTTTGGAAGGGTTTGAGAATGGTGGAGGGTATGGGGATCTTCATCATAATCATAATAATCATCATCATCATCATCATCATCATCAAGATCAGACGGCTGTGATGTTTCCAATGGAAGAATTGAAGCAAAGTAATGGAAGAGGTGAATTTGAGGAGAATAGGGGAGGAGGAGGGCATGGAGCTGGGGATAACAATTCAGGTGGTGGATTTTGGAATGGAATGTTGGGAGGTGGATCATGGTAA 855 41.17 MDTAHWPQFAGGGVVVKQMEGGGSSSSSKPPNNNNNNNNNNNNGNLLERKARPQKEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSSLSSSADKKINASDQNPKIIHHAHQDLNLAIFPPNNNNNNNNNTPIPSSTSTSSSSHLLGSFMTAAPAAGVFNGGGGFGLSELKPSSLSFSLEGFENGGGYGDLHHNHNNHHHHHHHHQDQTAVMFPMEELKQSNGRGEFEENRGGGGHGAGDNNSGGGFWNGMLGGGSW 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 179321 180583 - CcPI632755_01g000280.1 Cco01g0028 168890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0028 284 MobiDBLite consensus disorder prediction 100 129 - -
Cco01g0028 284 ProSitePatterns Zinc finger Dof-type signature. 61 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco01g0028 284 MobiDBLite consensus disorder prediction 248 274 - -
Cco01g0028 284 MobiDBLite consensus disorder prediction 144 170 - -
Cco01g0028 284 MobiDBLite consensus disorder prediction 20 46 - -
Cco01g0028 284 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 49 221 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0028 284 ProSiteProfiles Zinc finger Dof-type profile. 59 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco01g0028 284 MobiDBLite consensus disorder prediction 108 126 - -
Cco01g0028 284 MobiDBLite consensus disorder prediction 1 46 - -
Cco01g0028 284 Pfam Dof domain, zinc finger 57 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0028 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0028 Cco-Chr1:179321 Cco03g0254 Cco-Chr3:2777942 2.30E-30 dispersed
Cco01g0166 Cco-Chr1:1568558 Cco01g0028 Cco-Chr1:179321 9.30E-16 transposed
Cco08g0793 Cco-Chr8:19784306 Cco01g0028 Cco-Chr1:179321 3.40E-28 transposed
Cco01g0028 Cco-Chr1:179321 Cco05g0087 Cco-Chr5:753983 1.80E-27 wgd
Cco01g0028 Cco-Chr1:179321 Cco05g1076 Cco-Chr5:9579135 3.90E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1009 . . Bda05g00131 Bda07g01944 Bpe03g00228 . Bma10g01308 Bma14g02017 Cmo16g00040 . . Cma15g01014 . Car15g00949 . . Cpe14g00027 Bhi01g01514 . . . Hepe07g0043 Mch10g0043 . Cla01g00029 Cam01g0028 Cec01g0026 Cco01g0028 Clacu01g0028 Cmu01g0027 Cre09g2479 . Cone5ag0708 . . . . . Cme06g01166 Blo07g00326 Blo09g00015 . . . . . . . . Cmo15g01079 Cma16g00034 . Car16g00033 . . Cpe13g00322 Bhi12g00672 . . . . . . Cla05g00985 Cam05g1076 Cec05g1083 Cco05g1076 Clacu05g1070 Cmu05g1021 Cre05g1095 Lsi09g00009 Csa03g01968 Chy06g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58536 PF02701 zf-Dof 9.10E-34 No_clan Cco TF