Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0036 ATGCTTCGAGGTAGATCAATTACTCATGTGGTTGTGGATAACCAAATTGTAGATATCAAGAATCTTTGTGCTTCTTTTAGTTCGGTTTCTTTTCAGTTTGAGCCTCGTGCTCGCAACGAAACCACCCATTTGCTTGCTAGGTCGGGGTTGTGTCTACGTGATTTTTCATTCATTGTAACTCGGCAGCTCAAAATCAGCTTGACTCAGTCCACTTCGTCCTCTCCCTTTATCCAGCTGTTGTTCACCACAAGCTCAGTTTTTTCGGCTGCTCAACTCTCTAGTCTCTGCAATGTCGACTTTCCTTCTTCTATCTTCTCAATCTTCCACCTCGCACAGTCATTACAGTTGCAAAAGTGCATCACATGCCCTTCAGTTTGCCTTCAGAAACAGAAATATAATATCAAGCTTTATGCTGTACCTGTTGGAGCCTTTTCTTGTCGCTTTGCACCAACACCTTCTGCTTCTAATAGAGCTGATTTGGGGGGTCAGAGGAAACATATTTCTTATGCCTTCACTGCTCCAAATGGATATCAGAGGCCTAATCTCATGCACATCCGTACTGATGGGAACAGCATGATTGAGTTTGAAGTTCAGTTGGAAGAATTATTCAATGAGGTCAGAATGATGGCTATGAGTGGGAGGAAGAATGATGCTGTCGAGCTACTTCAAGCTAATTATGAAGCTGTAAAAGAACAGATGGAATCAGGTGCTATTGGCATCGAACAAGCTGCTGTTCTTGACATCGTGGCTTTGGGGTATATAACTGTTGGAGACTTGAAGTTTGTTGCTTCTGTATTGGATATATTGAACAAGGTTGTTGACAGTCTGGAGGACAGTGAACCCTTTCTGGATTCAGTGTTTCTGCATATGGGGAGCATGTACTCAACTTTAAAAAAGTTTGAGAAATCAATGTCTGCATACAAGAGGGCTATTGATATCATAGAGAAGAAAAGTGGAGAGAACAGTACCTTTCTTATCACTCCAATTTTAGGGATGGCTAAAGTTCTTGGTATCATTGGAAGAACTGCAAAGGCTGTAGAGTTTTACCATCGTGCAATTTCACTTCTGGAATCAACCAGAGGCTTTGAGAACGAGGATTTGGTTATACCTTTATTTGGTCTGGGCAATCTTATGCTCAAAGAAGGAAAAGGCAAGGATGCAGAAACTTGTTTTGCTGGGATTGTGGACATATATAAAAAGTTATATGGAGAAAAGGATGGAAAAGTCGGAATGGCTATGTATTCTTTGGCTAATGCAAAGTGTGCAAGAGGGGAAGCAGACGAAGCTGTTACCTTATATAGAAGAGCTTTGCACATTATCAAGGATTCAAATGATAAGGCTTTAGACGACAGCGTGATGGAGAAGATGAGGATTGAGTTGGCAGAACTATTGCATGTTGTTGGAAGGGGGAGTGAAGGCAGAGAAATTCTAGAAGAGTGTTTGTTGATCAATGAAAGGTCGAAAGGAAAAGAGCATCCCAGCTCAGTGAAGCACCTTGTAAACCTTGCAGCTTCTTATTCAAGGTCAAAGAATTATGCTGAGGCTGAGCGTCTGTTGCGAATTGGATTGGACGTTATGATAAAGGCAGTGGGACCTGATGATCAATCAATTACAGTCCCGATGTTGAATCTTGCTGTCACTCTTTACAATCTAAAACAAGACGACAATGCTGAGCAACTTGCACTGGAAGTTTTGCGAATACGGGAAAGTGCTTTTGGAAAAGATTCTCTTCCTGTTGGTGAGGCTCTAGATTGTCTGGTTTCCATTCAAAGCAGGCTAGGGAAGGATGAAAACGAGCTACTGAAGCTGCTTAAGAGAATTCTTAGAATCCAGGAGAGAGAGTTCGGGCATGATGGAAAAGAGGTCATTGATACCCTCAAGAAAATAGTGTTCTACATGGAAAAACTAGGAATGAAAGATGAGAAGTTTCTACTTCAAAAACGACTGTCCATGCTGCGGATGAAATTCAAGAACCAGATGCAATACTAA 1989 41.58 MLRGRSITHVVVDNQIVDIKNLCASFSSVSFQFEPRARNETTHLLARSGLCLRDFSFIVTRQLKISLTQSTSSSPFIQLLFTTSSVFSAAQLSSLCNVDFPSSIFSIFHLAQSLQLQKCITCPSVCLQKQKYNIKLYAVPVGAFSCRFAPTPSASNRADLGGQRKHISYAFTAPNGYQRPNLMHIRTDGNSMIEFEVQLEELFNEVRMMAMSGRKNDAVELLQANYEAVKEQMESGAIGIEQAAVLDIVALGYITVGDLKFVASVLDILNKVVDSLEDSEPFLDSVFLHMGSMYSTLKKFEKSMSAYKRAIDIIEKKSGENSTFLITPILGMAKVLGIIGRTAKAVEFYHRAISLLESTRGFENEDLVIPLFGLGNLMLKEGKGKDAETCFAGIVDIYKKLYGEKDGKVGMAMYSLANAKCARGEADEAVTLYRRALHIIKDSNDKALDDSVMEKMRIELAELLHVVGRGSEGREILEECLLINERSKGKEHPSSVKHLVNLAASYSRSKNYAEAERLLRIGLDVMIKAVGPDDQSITVPMLNLAVTLYNLKQDDNAEQLALEVLRIRESAFGKDSLPVGEALDCLVSIQSRLGKDENELLKLLKRILRIQEREFGHDGKEVIDTLKKIVFYMEKLGMKDEKFLLQKRLSMLRMKFKNQMQY 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 256860 264642 + CcPI632755_01g000360.1 Cco01g0036 168898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0036 662 SUPERFAMILY TPR-like 457 595 IPR011990 GO:0005515(InterPro)
Cco01g0036 662 Gene3D Tetratricopeptide repeat domain 395 448 IPR011990 GO:0005515(InterPro)
Cco01g0036 662 Gene3D Tetratricopeptide repeat domain 183 392 IPR011990 GO:0005515(InterPro)
Cco01g0036 662 SMART tpr_5 538 571 IPR019734 GO:0005515(InterPro)
Cco01g0036 662 SMART tpr_5 496 529 IPR019734 GO:0005515(InterPro)
Cco01g0036 662 SMART tpr_5 284 317 IPR019734 GO:0005515(InterPro)
Cco01g0036 662 SMART tpr_5 410 443 IPR019734 GO:0005515(InterPro)
Cco01g0036 662 SMART tpr_5 326 359 IPR019734 GO:0005515(InterPro)
Cco01g0036 662 SUPERFAMILY TPR-like 285 525 IPR011990 GO:0005515(InterPro)
Cco01g0036 662 Pfam Tetratricopeptide repeat 456 520 - -
Cco01g0036 662 Pfam Tetratricopeptide repeat 373 439 - -
Cco01g0036 662 Gene3D Tetratricopeptide repeat domain 449 661 IPR011990 GO:0005515(InterPro)
Cco01g0036 662 Pfam Tetratricopeptide repeat 287 315 IPR019734 GO:0005515(InterPro)
Cco01g0036 662 ProSiteProfiles TPR repeat profile. 284 317 IPR019734 GO:0005515(InterPro)
Cco01g0036 662 Coils Coil 297 317 - -
Cco01g0036 662 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 273 645 IPR051787 GO:0009507(PANTHER)|GO:0009658(PANTHER)
Cco01g0036 662 Pfam Tetratricopeptide repeat 541 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0036 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1027 . . . . . . . . . . Cma02g01123 . . . . Cpe05g00595 . . . . . . . . Cla01g00037 Cam01g0035 Cec01g0034 Cco01g0036 Clacu01g0038 Cmu01g0035 Cre09g2471 . . Cone14ag0004 . . Csa05g00043 Chy09g01443 . . . Bda06g00789 . . . . . . Cmo02g01152 . . . . . . . Bhi12g00649 . . Lac11g0164 Hepe06g0796 . Lcy12g0140 . . . . . . . Lsi09g00017 . . Cme09g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009135 1 6 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34