Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0040 ATGGGTAAGAAGGGAGGCAGCTGGTTCTTTGCTGTGAGAAAGGCCTTCAAACCTTCTCCTCTCACCCTTCCTCTAACTAAGAAATATGAAGAAGAGGGTCCTGAAGTTGTGTCCTTACACCATTTTCCAGCAGTCGAGAGCTCTCCTGAGAGCACCAATTCTACGCCATTAACATCCACTGATAGGAACCATGCGATTGCAGTCGCCGCCGCCACTGCTGCAGCGGCCGAGGCTGCAGTGGCGGCAGCTCATGCGGCAGCAAAGGTCGTTCGATTGGCTGGCTATGGTCGCCCATGCTCTAAGGAAGAAAGAGCTGCAATTGTTATTCAATCTTGCTTTAGAGGTCACTTGGCTCGATGTGCCTTGCGAGCATTGAAAGGTTTGGTAAGACTGCAAGCATTGGTCCGAGGCTATAATGTACGTAAACAAGCACAAATGACAATGCGATGCATGCAAGCATTAGTTCGTGTTCAAACTCGAGTTCGAGCCCGCAGACTTCAACTAGCACACGACAAGTGTCAAAGAAAAGTTGAAGATGTCGAAGAAGAAGAAGAAGAAGAAGAAGAACGGTTCAAACAGAAACATGAGAAGTTAAGGATTTCACAGAAAAGATTTGAAATGGAAGCTCAAAATATAGAGAAAAATAAAAGACTTTCTGTAATGAAACATGAACCTGGTCCGGTTTATGAAGGCGAAAACCGGCGTAGAAGCCAATGGGGTTGGAGTTCGCTGGACCGCTGGATGTCGTCTCAGCCTTCCCATGTTCACGACGACATGTCGGAGAAGACTGTTGAGATGAACTTGGACTTGGGCCCAAACTCGGCCCATCTTCCGAGCTACATGGCCCCAACTCAATCGGCCAAGGCGAAGGCCCGAAATCTGAATGCAGTTAAACCGCAGAGCCCACTTTTGAGCCCATCAACGAGGAAAAGTTGGGCTCCTGACTCGTCAAGTTCTACTGTTAACCAGGCTCAATACGGCCCAATAATCAAAAGTAAAGTGAGAAATACCCAATTACATGGTAGTGGTATTACAGACCAAGACCCAGATTACTATGATGGTGAAGAGTGGGCCTTTCCTCTTGGAGCCCATGGTTGGAGATGA 1104 47.74 MGKKGGSWFFAVRKAFKPSPLTLPLTKKYEEEGPEVVSLHHFPAVESSPESTNSTPLTSTDRNHAIAVAAATAAAAEAAVAAAHAAAKVVRLAGYGRPCSKEERAAIVIQSCFRGHLARCALRALKGLVRLQALVRGYNVRKQAQMTMRCMQALVRVQTRVRARRLQLAHDKCQRKVEDVEEEEEEEEERFKQKHEKLRISQKRFEMEAQNIEKNKRLSVMKHEPGPVYEGENRRRSQWGWSSLDRWMSSQPSHVHDDMSEKTVEMNLDLGPNSAHLPSYMAPTQSAKAKARNLNAVKPQSPLLSPSTRKSWAPDSSSSTVNQAQYGPIIKSKVRNTQLHGSGITDQDPDYYDGEEWAFPLGAHGWR 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 283504 285414 - CcPI632755_01g000400.1 Cco01g0040 168902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0040 367 PANTHER IQ-DOMAIN 5-RELATED 48 309 - -
Cco01g0040 367 Pfam IQ calmodulin-binding motif 103 123 IPR000048 GO:0005515(InterPro)
Cco01g0040 367 Pfam IQ calmodulin-binding motif 129 144 IPR000048 GO:0005515(InterPro)
Cco01g0040 367 MobiDBLite consensus disorder prediction 299 324 - -
Cco01g0040 367 Coils Coil 163 215 - -
Cco01g0040 367 ProSiteProfiles IQ motif profile. 126 153 - -
Cco01g0040 367 Gene3D - 99 152 - -
Cco01g0040 367 ProSiteProfiles IQ motif profile. 102 130 - -
Cco01g0040 367 Pfam Protein of unknown function (DUF4005) 274 309 IPR025064 -
Cco01g0040 367 SMART iq_5 101 123 IPR000048 GO:0005515(InterPro)
Cco01g0040 367 SMART iq_5 124 145 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0040 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0040 Cco-Chr1:283504 Cco09g2240 Cco-Chr9:36699663 7.10E-24 dispersed
Cco10g0041 Cco-Chr10:471900 Cco01g0040 Cco-Chr1:283504 2.10E-14 transposed
Cco01g0040 Cco-Chr1:283504 Cco05g1063 Cco-Chr5:9501604 9.80E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1037 . . . Bda07g01935 Bpe03g00191 . . Bma14g02008 Cmo16g00052 . Cma02g01119 . Car02g00929 . Sed01g3489 Cpe05g00598 Cpe14g00036 Bhi01g01494 Tan01g0090 Cmetu09g1788 . . Mch10g0056 . Cla01g00041 Cam01g0039 Cec01g0038 Cco01g0040 Clacu01g0041 Cmu01g0039 Cre09g2468 Cone1ag0985 Cone5ag0691 Cone14ag0010 Cone15ag0011 . Csa05g00047 Chy09g01440 Cme06g01146 . Blo09g00025 . . . . . . . Cmo02g01149 . Cma16g00043 . Car16g00041 Car18g01244 . . Bhi12g00643 . . Lac11g0159 Hepe06g0793 . Lcy12g0136 Cla05g00973 Cam05g1064 Cec05g1070 Cco05g1063 Clacu05g1057 Cmu05g1008 Cre05g1085 Lsi09g00020 Csa03g01982 Chy06g01197 Cme09g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013743 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25