Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0043 ATGATCAACAACAACTACAACAAGCTTCACTCCTCCTGCTCCCTCGACTCTACTCCGGCCACCTCCTTCCACCTTTCCCCCAATGATCCTCCGCCACCTCCACCCTCCTCCTCCCTCCGCCGCCGCTCTCGTATCCTTATCATCTCCTTCCTCTCTGTCCTCCTCATTGCTGCCTCCGTGGTCTCTGCCGCCGTGCTCGTCCGGTCCCATATCGCGTCGAGCCAACCCAATTTCCCTCACAACAAGCCCTCCCAAGCCATCTCCCGAGCCTGCAGCCACACTCTGTACCCATCTCTCTGCCTCTCTTCTCTTCTCTCCTTCCCCGGCTCTCTCTCCGCCGACGTCCATGACCTTGTTCACATCTCTCTCAACTTAACTCTTCAACATCTCAACAAAGCTCTTTATTCCACTTCTCAAATCCCCATCTCCCAAATCTCCAACGACCCTTTAGCCCATTCCGCTTATGAAGACTGCATGGAGCTTCTAAACGACGCCGTTGACGCTTTTTCCCTCTCTCTCTTTTCCACTGAAGCTTCTAATCACGACGTCATGACGTGGCTTAGTGCGGCATTGACTTATCATGACACGTGTACGGATGGATTTGCGGATGTGGCTGACTTGGCAGTTAAGGATCAGGTGGAGGCGAAGTTGAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATATTTTCTGGGTTTGGTGGTGGGGATTTGCCGGTGGAGAATAGGCGCCGCCGCAGGTTGATGGAGAGTGGTACACAGCCATGGGCGGCGGAGAATGGTGGTGATGGGGGTTTTCCACAGTGGGTGAGTGGGAAGGATCGGAGGCTTTTGGCTGCTCCTATTTCGGCGATTCAGGCGGATATTGTGGTGGCTAAGGACGGTTCTGGCAAATTCAAGACGGTGGCTGAGGCCATTGACGCGGCTCCGTCGTCGAGTGGCCGCCGGATTGTTATCTACATTAAGGCCGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTAGGAGATGGAAAGGGCATAACGGTCATTTCAGGTGGCAAAAGTATCTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCGGGAACAGGAATAATTTTAAGAGACATGACGTTTGAGAACACGGCAGGAGCAAGCAAGCACCAAGCAGTGGCATTGCGCTTGAGCGCTGACCACGCTGTGGTATACCGTTGCAACATCATTGGTTATCAAGACACTCTCTATGTGCACTCAAACCGCCAATTCTTTCGGGAATGCGACATCTACGGTACAGTGGACTTCATCTTTGGGAATGCGGTAGTTGTGTTCCAAAGTTGCAACATCTATGCCCGAAAGCCAATGGCGGGGCAAAAGAACACTATCACTGCCCAAGACCGGAAGGACCCAAACCAAAACACTGGAATCTCCATCCATGCTTGCAAGATCATTGCCACCAGCGACCTCGAAGCCTCCAAGGGTTCTTTCCCCACCTACCTGGGTCGTCCTTGGAAATTATACTCTAGAGTGGTTTACATGGTATCTTCCATGGGCGACCATATTCACCCACATGGTTGGCTGGAGTGGCAAGGTTCTTTTGCTCTCGACACTCTTTACTACGGCGAGTATATGAATTCTGGGCCAGGTGCCGCCGTGGGGCAGCGGGTCAAGTGGCCGGGTTATCGGGTCATAACTTCGACGGTAGAAGCCTCCAAATTTACTGTTGGACAATTCATTTATGGCTCTTCTTGGTTGCCCTCCACTGGAGTCTCCTTTTCAGCTGGATTATCCGCTAACTAA 1815 51.63 MINNNYNKLHSSCSLDSTPATSFHLSPNDPPPPPPSSSLRRRSRILIISFLSVLLIAASVVSAAVLVRSHIASSQPNFPHNKPSQAISRACSHTLYPSLCLSSLLSFPGSLSADVHDLVHISLNLTLQHLNKALYSTSQIPISQISNDPLAHSAYEDCMELLNDAVDAFSLSLFSTEASNHDVMTWLSAALTYHDTCTDGFADVADLAVKDQVEAKLSDLSEMISNSLAIFSGFGGGDLPVENRRRRRLMESGTQPWAAENGGDGGFPQWVSGKDRRLLAAPISAIQADIVVAKDGSGKFKTVAEAIDAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSIFDKVTTFRTATFAGSGTGIILRDMTFENTAGASKHQAVALRLSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMAGQKNTITAQDRKDPNQNTGISIHACKIIATSDLEASKGSFPTYLGRPWKLYSRVVYMVSSMGDHIHPHGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSAN 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 307140 312771 - CcPI632755_01g000430.1 Cco01g0043 168905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0043 604 SUPERFAMILY Pectin lyase-like 284 600 IPR011050 -
Cco01g0043 604 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Cco01g0043 604 Pfam Pectinesterase 289 586 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco01g0043 604 Gene3D - 283 601 IPR012334 -
Cco01g0043 604 NCBIfam pectinesterase inhibitor domain 60 232 IPR006501 GO:0004857(InterPro)
Cco01g0043 604 PANTHER PECTINESTERASE 44 592 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco01g0043 604 SMART PMEI_2 82 230 IPR006501 GO:0004857(InterPro)
Cco01g0043 604 CDD PMEI-like_3 90 236 - -
Cco01g0043 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 232 IPR035513 -
Cco01g0043 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 84 234 IPR035513 -
Cco01g0043 604 FunFam Pectinesterase 283 601 - -
Cco01g0043 604 MobiDBLite consensus disorder prediction 20 39 - -
Cco01g0043 604 Pfam Plant invertase/pectin methylesterase inhibitor 86 230 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0043 Cco-Chr1:307140 Cco09g0540 Cco-Chr9:4731061 9.20E-138 dispersed
Cco10g0003 Cco-Chr10:107308 Cco01g0043 Cco-Chr1:307140 2.80E-121 transposed
Cco01g0043 Cco-Chr1:307140 Cco05g1057 Cco-Chr5:9420749 3.20E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0043 - - - 0.0