Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0050 ATGCTTCAAATTTTCAATCTCCCATCAATATATATATTCCCCAAATCCCCATTTCGCTCGTACTTTCATAGCTTCAACAACAATCAAGAAAACCAGAGAAACCCACAGAGAGAGAGAGAGACAAAGAAAGAGACTGATTGTGTTTGTGTTGCGAGATTCTTCTCTTTGCCTCTCTTTCCCGCTTGTTCGTCTCTTTCCCAGAACTTGAAAAGTTCCCATTTCCAGAAATTAACGCCTGAGACTGGAGCTCGAGAAGAAAAGGATCATTTATGGAAGCCGACGCAGGAAGAGGCTAGGGCTTCAGTCCCTGAGCTTGAGGTCAAGTGCCATTCCACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGCTTGCTTCTGATAACGGAAAGAAAAGGGTCTATTTCAACAATCCCATGTGGCCTGGAGAAGCACACTCCCTCCAAGTAGAGTCTATTTTATTTAAAGGGAAGTCAGAGTACCAAGAAGTGGTTGTTTTTGAGTCCACTACATATGGGAAAGTACTTGTTCTAGATGGTATTGTCCAGTTAACTGAGAAAGATGAGTGTGCCTATCAGGAGATGATTACTCATCTGCCCCTCTGTTCAATTCCATCTCCCAAAACGGTTCTTGTTGTTGGTGGTGGTGATGGTGGAGTTCTGAGTGAAATCTCTCGCCACAACTCTGTAGAGCATATAGACATATGTGAGATAGATAAGATGGTCATTGATGTATCTAAGGAGTTTTTTCCTGATTTAGCTATAGGATTCGAGGATCCCCGCGTCCACCTTCACATTGGTGATGCTGTTGAATTCCTAAGGCGTGCATCAAGAGGGAAATATGATGCAATCATCGTTGATTCCTCAGATCCTGTTGGGCCTGCTCAGGAGCTAGTTGAGAAGCCATTCTTTGAGGCGATAGCAAAAGCATTGAAGCCTGGTGGTGTCCTCTGTAACATGGCAGAAAGTATGTGGCTACATACACATCTTATTGAAGATATGATCTCTATATGCCGTGAAATTTTCAAAGGATCTGTTCATTATGCATGGGGGAGCGTTCCAACTTATCCAAGTGGTGTGATAGGTTTTTTGCTATGTTCAACCGAAGGGCCACCTGTTGATTTTAAAAATCCTATTAATCCCATTGAGAAGTTAGAAGGTGCAGTCAAGCATAAAAGAGATCTCAAGTTCTACAATTCAGAGATACACTCGGCTGCTTTTGCCTTGCCATCATTTCTGAGGAAGGAGGTGAAGGCACTTGCTGATTCTCCAAACCCAGCACAAAACTGA 1284 43.15 MLQIFNLPSIYIFPKSPFRSYFHSFNNNQENQRNPQRERETKKETDCVCVARFFSLPLFPACSSLSQNLKSSHFQKLTPETGAREEKDHLWKPTQEEARASVPELEVKCHSTVVSGWFSEPQLASDNGKKRVYFNNPMWPGEAHSLQVESILFKGKSEYQEVVVFESTTYGKVLVLDGIVQLTEKDECAYQEMITHLPLCSIPSPKTVLVVGGGDGGVLSEISRHNSVEHIDICEIDKMVIDVSKEFFPDLAIGFEDPRVHLHIGDAVEFLRRASRGKYDAIIVDSSDPVGPAQELVEKPFFEAIAKALKPGGVLCNMAESMWLHTHLIEDMISICREIFKGSVHYAWGSVPTYPSGVIGFLLCSTEGPPVDFKNPINPIEKLEGAVKHKRDLKFYNSEIHSAAFALPSFLRKEVKALADSPNPAQN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 376142 381360 + CcPI632755_01g000500.1 Cco01g0050 168912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0050 427 Gene3D Spermidine synthase, tetramerisation domain 108 181 IPR037163 -
Cco01g0050 427 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 115 366 IPR030374 -
Cco01g0050 427 Pfam Spermidine synthase tetramerisation domain 137 184 IPR035246 -
Cco01g0050 427 NCBIfam spermidine synthase 141 410 IPR001045 GO:0003824(InterPro)
Cco01g0050 427 Gene3D Vaccinia Virus protein VP39 182 420 IPR029063 -
Cco01g0050 427 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 208 221 IPR030373 -
Cco01g0050 427 PANTHER SPERMIDINE/SPERMINE SYNTHASE 97 416 IPR001045 GO:0003824(InterPro)
Cco01g0050 427 FunFam Spermidine synthase 1 108 181 - -
Cco01g0050 427 Pfam Spermine/spermidine synthase domain 187 375 - -
Cco01g0050 427 CDD AdoMet_MTases 229 315 - -
Cco01g0050 427 Hamap Polyamine aminopropyltransferase [speE]. 116 416 IPR001045 GO:0003824(InterPro)
Cco01g0050 427 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 415 IPR029063 -
Cco01g0050 427 FunFam Spermidine synthase 1 182 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0050 K00797 - - csv:101222254 640.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0050 Cco-Chr1:376142 Cco05g2791 Cco-Chr5:35682130 8.50E-130 dispersed
Cco05g0610 Cco-Chr5:4956975 Cco01g0050 Cco-Chr1:376142 4.20E-31 transposed
Cco08g1138 Cco-Chr8:23235252 Cco01g0050 Cco-Chr1:376142 5.20E-27 transposed
Cco11g0175 Cco-Chr11:1765729 Cco01g0050 Cco-Chr1:376142 6.90E-26 transposed
Cco01g0050 Cco-Chr1:376142 Cco05g1047 Cco-Chr5:9248472 1.90E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g882 . Blo15g00090 . . . Bpe07g01011 . . . Cmo18g01338 Cma02g01110 . . . Sed05g0421 Cpe05g00606 . Bhi01g01471 Tan01g0127 Cmetu09g1394 Lac11g0146 Hepe07g0078 Mch10g0078 . Cla01g00051 Cam01g0048 Cec01g0048 Cco01g0050 Clacu01g0051 Cmu01g0048 Cre09g2459 Cone1ag0965 . Cone14ag0022 Cone15ag0025 . Csa05g00058 Chy09g01431 Cme06g01114 . . Bda06g00781 . . . . Bma12g01194 . Cmo02g01138 . . Cma18g01308 . Car18g01222 Cpe09g00034 . Bhi12g00627 . . . . . Lcy12g0124 Cla05g00957 Cam05g1048 Cec05g1053 Cco05g1047 Clacu05g1041 Cmu05g0991 Cre05g1068 Lsi09g00028 . Chy06g01236 Cme09g01974
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002366 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 2 2 5 5 1 62