Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0051 ATGATAATTATCATGACTTATCTGCAGGAGAAGATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGACAACACTTTAAATGCTGGAAAGATTGGGACAAGAGCTGACTTAGTTTCAGAGAAGCCTCTCAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAATCATCTTCTTTCAATAAATTTATGTCCAGAGGTCTTGGGACTGGAAAAAAAGTGCTTGACCCACAGGGTCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGACGATAGGAAATGTCTTGGGTTGGATGAGAAGATGGAGATTACAGCTAGTGTGTTACGTTCATTCACTGATATATTTTATATATTACATATTGTTTTTCAATTTCGTACGGGATTTATCGCCCCCTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAGAGATATCTCTCATCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATAGTTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGGACTTGCTGAAATTCGTTGTTTTCTTCCAGTATGTGCCACGGTTTATCAGAATCTATCCATTATATAGAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGAGCGTTCTGGTACTTGTTCTCTATAGAACGAGAAACTACATGTTGGCGGAGGGCTTGTCATAATCGTACTGGCTGTGTTTCTAATTCACTATATTGTGATGTCAGTCCAGGAGACAACTCATTTTTAAATATTTCATGTCCTCTAGTTGATGACAATCCTCCTTTTGATTTTGGAATATTTCTTGATGCTCTTGAATCTGGTGTTGTGGGGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCATTTACGTGTGGGAAATTTGCTTTGCTGTTTTCATCTCCATTTCTGGCTTGGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCGACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTGCTCCCTGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAGCAGTACAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATCTGATTCGAAATCTTCCAAAAGATCTCAGAAGGGATATTAAACGCCATCTTTGCTTGTCTTTGCTAATGAGGGTACCCATGTTTGAAAAAATGGATGAACAATTGTTGGATGCAATGTGTGACCGTCTCAAGCCAGTACTATACACAGAGGAAAGTTTCATTGTTAGGGAAGGAGACCCGGTAGACGAGATGATTTTTATTATGCGAGGCAAGTTATTGTCTGTAACTACGAATGGGGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCGGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACACTCCTCATCCAATCTGCCAATTTCGACGAGAACTGTTCGAACACTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCTGATGACTTAAAGTTTGTAGCCTCACAGTTCCGAAGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCGCAGCAATGGAGAACATGGGCAGCATGTTTTATTCAAGCAGCATGGCGTCGATACCGCAGAAAGAAGCATGAGCAGACCCTCTTGGAAGAAGAGAACAGGTTAAAGGATGCATTGGCCAAGACAGGTGGGAGTTCTCCAAGTTTAGGTGCCACCATCTATGCATCCAGATTTGCAGCTAACATCCTTAGAACGATTCGACGGACAAGCTCACGGAAGGCCAGGATTCCAGAGAGAATACCACCGATGTTGCTTCAGAAACCAGCAGAACCTGATTTTACCTCTGAAGAGAATAGTTGA 2148 41.76 MIIIMTYLQEKIVRFQDWSSDKTSRGLYSADNTLNAGKIGTRADLVSEKPLKELETGSYRINRIKKSLKSSSFNKFMSRGLGTGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDRKCLGLDEKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIVIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYREVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWRRACHNRTGCVSNSLYCDVSPGDNSFLNISCPLVDDNPPFDFGIFLDALESGVVGSMNFPQKFFYCFWWGLRNLSSLGQNLQTSIYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLIRNLPKDLRRDIKRHLCLSLLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESFIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 383331 389741 - CcPI632755_01g000510.1 Cco01g0051 168913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0051 715 Coils Coil 637 657 - -
Cco01g0051 715 ProSiteProfiles cAMP/cGMP binding motif profile. 485 569 IPR000595 -
Cco01g0051 715 Pfam Ion transport protein 100 412 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0051 715 SUPERFAMILY Voltage-gated potassium channels 89 407 - -
Cco01g0051 715 Gene3D Helix hairpin bin 411 476 - -
Cco01g0051 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 703 - -
Cco01g0051 715 Pfam Cyclic nucleotide-binding domain 506 597 IPR000595 -
Cco01g0051 715 Gene3D - 100 409 - -
Cco01g0051 715 FunFam Cyclic nucleotide-gated ion channel 1 483 601 - -
Cco01g0051 715 SUPERFAMILY cAMP-binding domain-like 414 607 IPR018490 -
Cco01g0051 715 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Cco01g0051 715 CDD CAP_ED 485 616 IPR000595 -
Cco01g0051 715 Gene3D Jelly Rolls 483 603 IPR014710 -
Cco01g0051 715 SMART cnmp_10 485 616 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0051 Cco-Chr1:383331 Cco02g2273 Cco-Chr2:35306808 2.20E-186 dispersed
Cco01g1858 Cco-Chr1:31102437 Cco01g0051 Cco-Chr1:383331 2.50E-107 transposed
Cco02g1568 Cco-Chr2:28369951 Cco01g0051 Cco-Chr1:383331 3.00E-208 transposed
Cco10g1454 Cco-Chr10:27664234 Cco01g0051 Cco-Chr1:383331 6.10E-209 transposed
Cco01g0051 Cco-Chr1:383331 Cco05g0109 Cco-Chr5:893362 3.50E-192 wgd
Cco01g0051 Cco-Chr1:383331 Cco05g1044 Cco-Chr5:9207580 1.50E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0051 K05391 - csv:101221781 1362.82