Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0066 ATGAGCTTCAAAAGGGACCTCAAGCTTGTCGTCTTCGTTTTCTTGGCAGTCTTCTGGTTTGCAGCGACTTTTTATCCAGTCATGTCAGAGCCAATCCAAGACAAGGAAGCTTTGCTTAATTTTATCAACAAGATGGATCACTCACACTCACTCAATTGGAAGAAGAGCACTTCTTTATGCAAAGAGTGGATGGGAGTTCAATGCAACAATACTGAATCCCAAGTTGTAGCTCTGCGATTGGCTGAAGTTGGCTTACACGGTTCGATTCCAATCAACACTCTTGGTCGACTATCAGGACTTGAAACTCTAAGCCTAGGATCGAATTACATATCAGGGCCTTTCCCTTCCGACTTCCAAAAACTGAGAAATCTCAACTCACTCTACCTGGAAAACAACAAGTTTTCTGGTCCATTGCCATTGGATTTCTCAGTATGGAAGAATCTCAACATCATTGATTTGTCCAACAATGCCTTCAATGGGAGCATCCCTAGCTCGATTTCAAACACGACACATTTAACAACATTAAACCTTGCCAATAACTCACTCTCTGGTAAGATTCCAGACCTCCACCTTCCTAATTTGCAGGAGTTGGATCTTTCAAACAACCATCTCACAGGGAATGTCCCTCAGTCCCTTCAAAGATTTCCGAGTCGGGCATTCTCCGGCAACAACCTCATCCCTGGAAATGCCATTCCTCCAGTTCGTCCTGGACAATCGCCCAATGCTCAACCATCAAAGAAAAGTACAACAACAATTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAATGGGGCTAGTTATAGCAGTCATTTTGATGGTTATGTGCTGCTCAAACAGAGGAGTAAAAGAAAAGGCATCATCAAAACTGGACAAACAAGATCTGTTTGTAAAGAAAAGGGAATCTGATACACAAAGCAACAACCTCAAGTTTTTTCAGAGTCAGAGCCTTGAGTTTGACTTGGAGGACTTGTTGAGGGCATCTTCCGAGGTGCTTGGGAAGGGGACGTCCGGGACGACGTATAAGGCGACATTAGAAGACGGTAATGCCGTGGCAGTGAAGAGGTTGAAGGAAGTGAGTGTTTCAAAGAAAGAATTTGAGCAGCAAATGGATGTGCTTGGGAGCATTGAACATGAAAATGTGTGTGGTTTAAGGGCTTATTATTATTCAAAAGATGAGAAACTCATGGTCTTTGACTTTAACCAACATGGAAGTGTCTCAGCAATGTTGCATGTTGCGAGAGAGAAAGGGCAATCTCCTCTAGACTGGGAAACTCGACTCCGAATCGCCATTGGCGCCGCCAGAGGAATCGCTCGCATTCACTCAGAAAACTGCGGCAAACTCGTTGTCCATGGAAACATCAAGGCCTCAAACGTCTTCCTCAACTCCGACGGCTACGGTTGCGTCGCAGACGCCGGCGTCGCTGCTCTGATGAACCTCATGGTCCCGCCAGCCACCAGATCCGCTGGATACCGTGCTCCCGAACTCAAGGACTCTCGCAAAGCATCTCAAGCCTCTGATACTTACAGCTTCGGCGTCGTGCTTCTCGAGCTCCTCACCGGAAAATTTCCACTGCATACGAAGGGAGGCAACAGCGGCGGCGGCGGCGGCGGCGATCAGATTATCCACCTAGTGCGTTGGGTGAACGCGGTGGTCCGCGAGGAGTGGACGGCAGAGGTGTTTGATGTGGAGCTTTTGAGGTATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAGATTGCGCTATCTTGTGTAGGAAGAGTTCCGGATGATCGGCCGGCAATGGCGGATGTTGCGGCTCGTTTGGAGGGAGTTCGTCGGGTGAGCGGCGTAGGAAGCCTACCACCGCCGCCGCCGTTGGAACGTGGAGCGGGGGATTTGGTTCAGATTCAGGTGAATGTGGCTGAGGGTGACGGTGACGGCGGAGCTCCGTCGAGATCGAATTGA 1959 48.49 MSFKRDLKLVVFVFLAVFWFAATFYPVMSEPIQDKEALLNFINKMDHSHSLNWKKSTSLCKEWMGVQCNNTESQVVALRLAEVGLHGSIPINTLGRLSGLETLSLGSNYISGPFPSDFQKLRNLNSLYLENNKFSGPLPLDFSVWKNLNIIDLSNNAFNGSIPSSISNTTHLTTLNLANNSLSGKIPDLHLPNLQELDLSNNHLTGNVPQSLQRFPSRAFSGNNLIPGNAIPPVRPGQSPNAQPSKKSTTTIGEAAILGIIIGGSAMGLVIAVILMVMCCSNRGVKEKASSKLDKQDLFVKKRESDTQSNNLKFFQSQSLEFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVAVKRLKEVSVSKKEFEQQMDVLGSIEHENVCGLRAYYYSKDEKLMVFDFNQHGSVSAMLHVAREKGQSPLDWETRLRIAIGAARGIARIHSENCGKLVVHGNIKASNVFLNSDGYGCVADAGVAALMNLMVPPATRSAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKGGNSGGGGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPAMADVAARLEGVRRVSGVGSLPPPPPLERGAGDLVQIQVNVAEGDGDGGAPSRSN 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 501709 504107 - CcPI632755_01g000660.1 Cco01g0066 168928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0066 652 Pfam Leucine Rich repeats (2 copies) 170 205 IPR025875 -
Cco01g0066 652 PRINTS Leucine-rich repeat signature 172 185 - -
Cco01g0066 652 PRINTS Leucine-rich repeat signature 191 204 - -
Cco01g0066 652 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524(InterPro)
Cco01g0066 652 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Cco01g0066 652 Gene3D Transferase(Phosphotransferase) domain 1 405 614 - -
Cco01g0066 652 FunFam Probable inactive receptor kinase RLK902 31 190 - -
Cco01g0066 652 Pfam Leucine rich repeat 88 134 IPR001611 GO:0005515(InterPro)
Cco01g0066 652 PANTHER OS05G0588300 PROTEIN 11 616 IPR050994 -
Cco01g0066 652 SUPERFAMILY Protein kinase-like (PK-like) 333 626 IPR011009 -
Cco01g0066 652 ProSiteProfiles Protein kinase domain profile. 329 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0066 652 MobiDBLite consensus disorder prediction 226 248 - -
Cco01g0066 652 FunFam pollen receptor-like kinase 1 299 403 - -
Cco01g0066 652 Pfam Protein kinase domain 332 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0066 652 Gene3D Phosphorylase Kinase; domain 1 295 403 - -
Cco01g0066 652 ProSiteProfiles Leucine-rich repeat profile. 171 192 IPR001611 GO:0005515(InterPro)
Cco01g0066 652 Gene3D Ribonuclease Inhibitor 190 232 IPR032675 -
Cco01g0066 652 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Cco01g0066 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 404 616 - -
Cco01g0066 652 Gene3D Ribonuclease Inhibitor 32 189 IPR032675 -
Cco01g0066 652 SUPERFAMILY L domain-like 40 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0066 Cco-Chr1:501709 Cco01g0209 Cco-Chr1:1983287 7.60E-154 dispersed
Cco01g0066 Cco-Chr1:501709 Cco05g1027 Cco-Chr5:9037388 3.90E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86488 PF00069 Pkinase 4.60E-31 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0066 - - - 0.0