Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0075 ATGGAGATAGATGGGCTATGTGTTATCTGCGCTGGTCTTGGAATCGTCGAAGAGGATGACTACGGCAATCGGATCGGTTACTCCAAAACCGAGTTCTGTTTAGATAATTTGAAGGATTTGTTAAGGTTCTTGAGGCGAGACGACCCGCAGACTCGCGATGTTTTTAAGCAAGTTTGTAAATGGAACGTTGTGGGTAAAGATCTGATACCCATTATTGAATACTGTCAAGATGATCGTAATGCAGTCTTAAATGCAGTGAAGATTTTGGTGTTCCTCACAATGCCTATTGAACCCACGTCTAGTGACATCGCACAACAGATCGAATATTTATGGGGTTTGAAGTCTTTAATCACATGCAGTAATGTTGTTGCCATAATTGCTACACTTTTGGAGAGTCCACTGGAAAATCTGGATTGTGGAACATTCTCAGAAGATGACTGGAAATTGGCGCAGCTGGTTATAACACTCTTCCGAAATGTTTTGGCTATTCAAGAAATCTCATTGCAGCAAAAGGCTGATGGATCAGCTTGTCAGTTAATATTACTGAGAGACAAATTTCTGGAGGTCTTATTCCGGGAGAATGTTATGGACATAATATTGGTGATGACACAACACATTGACGGTTCTTGCAGCCATCTCCGTCAAGACAAATTAGTCTTTCTGGAAATATTTTATTACATATTTATGGGACAAGAGCCAGAGTTCATCGCAAAAGTACCTCAAAACTGCAGTGAGGAAAATGTAGAAGCGGAAGTGGTATCTTCTGTCAATAGTCTGAAGTCTATGATGGAGGAAGATAGAAGAAAGTTTTCTAGATTACACAATATCAACCGCCATTCTCAGTTTACTGGAACTTTTACTCGGCATACCTTGGATGGTTCAAAGTTAGTACTCAAAGGAAAACCATCTTTGACTTCTTGTACCAGCCTTAGACCACCTAAAGTTTGTAGAGGTCCAGTTAAAAAAATTGCATGGGACCATGGACGATTAACTTCGAAAAACAGCAAACTTCTGCAGTTACTTCATGATTTTATCAACCAGTTTCTTTCAGGCGGCTACAATGCTCTGATGCAGTTGGTGCATGAAGATATTGAAAAGGAACATCATTCCATCCAGAACAACGATGTGGTTGTATTTTTTCAGGTCGCACAGTTTGCTATTTCTTTTCAGTATCACAAGTTCTCAACTTCAAAGATAATTGAGTCTGATACTGGCGAGGCTCAAACGGAACATGCTGATTCCACATTTTTCCAAGGCAACATGTGCGGTCCAATAGCAGCAACAATGAACGAGGCAATGTTTCAGCTAGTTGTTACAAAATGGCGTTATGCATTTGAAGGCTTAAAGGAAACTAATGACTTTAAGTTTCTTTCTGCAGCTGGCTCTCTGATGAAAAATATGATTTGCATGCTAGATTTGGTGCTAAAATTATTGCCAGAAGATTCAAAGGAGCCTCAAACAGCTCGTATTCTACTTTACAAATTATTTTATGATCAGACAGATCAAGGGATGACTCAATTCCTCTTAAATTTGCTTAAGTCATTCAACACTCACAAACAACCCAAAAGTGATCTTGCAGATTTAGTTGAGATGATCTACAAAGTCGTACAGCTTATGGAGAGCCTCCAAGCACGTGGAGCACTTCGGGTTTCCAAAAAATCAAGGAGGGGAAGAAAGGCAAAGGCAGCAAATAATAAGGGCAACAAACAGTCAGAAGATCAGGGAGCTGAGAATAAGATGGCCATAACCCATAATGAGCAATCAACAGATGTCGATGTTGGTGAAAATGGTAACTTGAAAATGAGTGCTGATGGTAAAGAAGAGATTTCTATTACTGCTAAGGCCAATGAACCTGAAATGCTAGACTTAAACACGGGAACTTTTGAAGGCAGTCTGTCACAGAGAGAGAGCAAAAAATTGAATGATGGTTATAGCACAGCCGACTCTTCTAGTGATGAACAGCAAAATAGAATTGTGGAGGTTGATCTTAAAGTATCAAGTCTAGTATCTACTTTTGCCAACAACAACATTATTCAGAAAATATGCTGGTTGCTTAAGTTTTACAAGAGCAATGCTACTAGTACAAACCATTACATAATATGTATTTTACGGAGGATCACTGAGGATTTGGAGCTTTCTCCAATGCTGTACCAGTTATCTGTCCTTCCCACATTTTATGATATTCTATCTGAACAGAAGTCAAGTCCATGCAAGGAATATGCTACTATAGTTGATTTCCTGACAAGTCTGGTGAGAAAGATGCTAAGGAAGATAAAGAATCAGCCACTCCTTTTTGTTGAAATTCTGTTTTGGAAGACCCGGAAAGAATGCCATTACATTGACGCTGAGTACTTAGTGCATGAGCTTGGCTGTTGGAAGAAAGAAAGTAGGGAGGGGAATTTTACCGATGGTGATGAAAATGGCTCGTTGATGGGCAAGCATTGGACTCCCAGAAGCATAGCAGATGCACTTGGTGAAGATGAAGCTGATGTTGTGATCACCACTAACGAGTTTGGATTTCATACTGAAGCAAAGTCTGACGAAGTCACGGGAGGCCTTGAGTCTACCACCTTGGATGATGAGATAGACGGGAAAAAACACAATGAAAATGAGCTGTCTATGGATGATAAATCCAAAAGGCTTCCTAAAAGAAAGAGACTTGTTCTTGATGCTGAACTGGAGACTGAAATTAAAGATCTTTATGAGAAATTCAAGGAGGACAGGAACTGTAGCAAACTTATCGCGGAGAATCTTGATAATGACGTCAAAGTTTCGCCTGCCCAGGTTTCCAATAAGCTTAGACAGATGGGTTTGAAAGTTTCTCAAAGAAAGAAGAGGCAGTATGCTGATGAAGCCTCTTCTGCTGAAAATCTTGAAGGCGAAAGCAATGTGGAAGAAAGGAATAGTCCACTTAACTCAAATGTTTTTGGGAAAAGTTCATTGAATCAACCTTCGCTCACTCGAAAAAGAGTTCTTGCTTTTGATAAAGAACACGAAGAGAAGATTAGAGCTTTATATGAGCAGTTTAAAGACCATAAGAGATGTAGTTCTATGATTGCAAATGCGCTGGATGCTGATAACAAATTCACTCCTGCCCAAGTTTCCCGAAAGCTCAAGCAATTGGGTTTGTATATTTCTCGTAAGAGAAGGTCAAGTGATGGGGATCACAATGATTCTGTTATTGATAAGGAATCTGAAAGTGATGATGAAACATTGCTCTCATTAATAAATAGGAAAAAAGGGAAGCATCTTCAAAAGTCAACTGAAACGCCCAGTTCCATCTCAACACAGAGCATATTAATTGATGAGGAATCTGAAGATGTAGCTGTTGGAAGGTCCATGCAAATGGAGGATAGCAACCTAGCCAGTAGCTTGGAGCCTATGGAGGTTGGTAAAGCGCCTTCAGATGATGTTGACTTGAATGACTTTACGGAAAGTCAAGGTAAGAATGCTGAAGCTGGCGTCATGCCACGACTAGAAGAAAGTATAGGATTGTTGATCTTGAGGATGAAGAATGAGATGGGAATGGCCAGGATATCGACATTGCTTTGCTACTACCATCTAACAAACTGTAGTTGA 3579 39.93 MEIDGLCVICAGLGIVEEDDYGNRIGYSKTEFCLDNLKDLLRFLRRDDPQTRDVFKQVCKWNVVGKDLIPIIEYCQDDRNAVLNAVKILVFLTMPIEPTSSDIAQQIEYLWGLKSLITCSNVVAIIATLLESPLENLDCGTFSEDDWKLAQLVITLFRNVLAIQEISLQQKADGSACQLILLRDKFLEVLFRENVMDIILVMTQHIDGSCSHLRQDKLVFLEIFYYIFMGQEPEFIAKVPQNCSEENVEAEVVSSVNSLKSMMEEDRRKFSRLHNINRHSQFTGTFTRHTLDGSKLVLKGKPSLTSCTSLRPPKVCRGPVKKIAWDHGRLTSKNSKLLQLLHDFINQFLSGGYNALMQLVHEDIEKEHHSIQNNDVVVFFQVAQFAISFQYHKFSTSKIIESDTGEAQTEHADSTFFQGNMCGPIAATMNEAMFQLVVTKWRYAFEGLKETNDFKFLSAAGSLMKNMICMLDLVLKLLPEDSKEPQTARILLYKLFYDQTDQGMTQFLLNLLKSFNTHKQPKSDLADLVEMIYKVVQLMESLQARGALRVSKKSRRGRKAKAANNKGNKQSEDQGAENKMAITHNEQSTDVDVGENGNLKMSADGKEEISITAKANEPEMLDLNTGTFEGSLSQRESKKLNDGYSTADSSSDEQQNRIVEVDLKVSSLVSTFANNNIIQKICWLLKFYKSNATSTNHYIICILRRITEDLELSPMLYQLSVLPTFYDILSEQKSSPCKEYATIVDFLTSLVRKMLRKIKNQPLLFVEILFWKTRKECHYIDAEYLVHELGCWKKESREGNFTDGDENGSLMGKHWTPRSIADALGEDEADVVITTNEFGFHTEAKSDEVTGGLESTTLDDEIDGKKHNENELSMDDKSKRLPKRKRLVLDAELETEIKDLYEKFKEDRNCSKLIAENLDNDVKVSPAQVSNKLRQMGLKVSQRKKRQYADEASSAENLEGESNVEERNSPLNSNVFGKSSLNQPSLTRKRVLAFDKEHEEKIRALYEQFKDHKRCSSMIANALDADNKFTPAQVSRKLKQLGLYISRKRRSSDGDHNDSVIDKESESDDETLLSLINRKKGKHLQKSTETPSSISTQSILIDEESEDVAVGRSMQMEDSNLASSLEPMEVGKAPSDDVDLNDFTESQGKNAEAGVMPRLEESIGLLILRMKNEMGMARISTLLCYYHLTNCS 1192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 553556 561979 + CcPI632755_01g000750.1 Cco01g0075 168937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0075 1192 PANTHER TIMEOUT/TIMELESS-2 4 1115 IPR044998 GO:0000076(PANTHER)|GO:0003677(PANTHER)|GO:0006281(PANTHER)|GO:0031298(PANTHER)|GO:0043111(PANTHER)|GO:0048478(PANTHER)
Cco01g0075 1192 MobiDBLite consensus disorder prediction 848 878 - -
Cco01g0075 1192 MobiDBLite consensus disorder prediction 1049 1068 - -
Cco01g0075 1192 MobiDBLite consensus disorder prediction 858 878 - -
Cco01g0075 1192 MobiDBLite consensus disorder prediction 937 980 - -
Cco01g0075 1192 MobiDBLite consensus disorder prediction 567 595 - -
Cco01g0075 1192 Pfam Timeless protein 27 287 IPR006906 -
Cco01g0075 1192 MobiDBLite consensus disorder prediction 547 604 - -
Cco01g0075 1192 MobiDBLite consensus disorder prediction 956 980 - -
Cco01g0075 1192 MobiDBLite consensus disorder prediction 549 563 - -
Cco01g0075 1192 MobiDBLite consensus disorder prediction 630 652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0075 K10997 - - csv:101218315 2034.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g830 . Blo15g00103 . . . Bpe07g01002 . . . . . . . . . . . . . . . . . . Cla01g00074 Cam01g0074 . Cco01g0075 Clacu01g0075 Cmu01g0076 Cre09g2433 . . . . . Csa05g00086 . . . . Bda06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00056 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011825 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 30