Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0083 ATGGAACAGAAGCACATTTTTTTATCTGCTTTGGGTGTTGGGGTTGGAGTTGGGGTAGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGGAAATGGGTTGGAGGGAATGGCTCTTCTGATGAGATTACAGGGCAAAAGATTGAACAGGAGCTGATCAGGCAGCTGCTTGATGGCAAAAACAGCAATGTAACTTTTGATGAGTTTCCTTATTATCTAAGCGAAAGGACGCGGGTGCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGTGACATCTCCAAGCACACCAGAAATCTTTCACCAGCAAGTCGGGCTATTTTGCTTTCAGGACCAACAGAACTCTACCAGCAGATGCTTGCCAAGGCTCTGGCGCATCACTTTGAGTCAAAGTTGCTGTTGTTAGACGTTTCTGACTTTTCTTTAAAGATGCAGAGCAAATATGGTTGTCCCAAGAAAGAATCTTCATTCAGGAGGTCGATCTCTGAGGTGACATTTGAGCGAATGTCTAGCGTTTGGGGTTCCTTCTCGATTCTTCCTATGAGTGGAAATACTAGGGGAAACCTAAGAAGGCAAAGCAGTACTACCGACATTCAATCGAGATGCACCGATGGCTCGTCTAATCTTCCAAAACTTCGGAGAAATGCTTCTGCTGCATCTGATATCAGTAGTATCTCATCAAACTATGCTTCAACAAACCCAGCTTCTGCCAAGCGCACAAATAGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCACTTTATAAGGTCTTGGTGTCGGTATCCGAAACTAGTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTCAGTCACAAAGGATGTACAATCTGTTCAATAGATTTCTAAACAAGCTCTCGGGATCAGTTTTAGTACTTGGTTCTCGAATGGTAGATGTGGAAAATGATTGCGGAGATGTTGATGACAGACTGACCAATTTATTCCGGTATAGTGTTGAAGTTCGACCCCCTGAAGATGAGAACCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGACATGAAGATGATCCAGTTCCAAGATAATAAAAACCACATCACTGAAGTACTTGCTGCAAATGATCTTGAATGTGATGATCTTGGTTCAATCTGCCATGCAGACACCATGGTTCTCAGTAATTATATTGAAGAAATTGTCGTGTCGGCAATATCCTATCATCTGATGAACAACAGGGATCCAGAATACCGAAATGGAAAACTTCTGATATCTTCTAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGAAAAGACACTCTAAAGTTAGAGACGAATGCAGAATCATCGAAGGAACCCCAAAGGGACGAAGCTGTTGGGGCGAAGACTGAATCTAAATCCGAAAATCCAGCCGCAGAAAACAGAAGTGAGGCAGAGAAATCTGTTCCTATAGTGAAAAAGGATGTTGAAAATGTGCCTCCACAAAAAGCACCTGAAATTCCTCCTGATAACGAATTTGAAAAGCGTATAAGACCTGAAGTTATCCCTGCAAATGAAATTGGGGTGACATTTGCAGACATTGGTGCTATGGATGATATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAAGGCGGGCTTCTTAAACCTTGTAGGGGTATCCTGCTTTTCGGCCCTCCTGGAACGGGTAAAACAATGCTAGCAAAGGCCATTGCTAATGAAGCCGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGCGAAGATGAAAAGAATGTTCGTGCATTGTTTACACTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTGGATGAAGTCGATAGCATGCTCGGCCAGAGAACTAGAGTGGGAGAGCACGAGGCCATGCGGAAGATTAAAAATGAATTCATGTCACACTGGGATGGACTGCTGACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGCAGAATTATGGTTGGTCTTCCATCAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAATTTGTGTGTGACTGCAGCATATCGGCCTGTTCGAGAGCTCTTGCAACAAGAGAGATTGAAGGATTTGGAAAAGAAGCAGAGAGAGACAAAGGAAAAGGAGAAGCATAAGCAGGAGGAGGAGGAGAAGGAAAATGAGAAGGAGAAGCAGGAGAAGGAGAAGGGGACGGAGATGGAGACCGAGAACGAGAAGAAGGAGAAGGAAAATAACTCAGAAGTAGTTACAGGTACAAAAGAGGCGGAAAAAGAGGAACAAGTGATCATTCTGAGGCCTTTAAATATGGATGATATGAGGCAGGCCAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAGGGATCAGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAACTTACATATTTCTTATAG 2622 42.56 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVGGNGSSDEITGQKIEQELIRQLLDGKNSNVTFDEFPYYLSERTRVLLMSAAYVHLKHCDISKHTRNLSPASRAILLSGPTELYQQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTFERMSSVWGSFSILPMSGNTRGNLRRQSSTTDIQSRCTDGSSNLPKLRRNASAASDISSISSNYASTNPASAKRTNSWCFDEKLFLQSLYKVLVSVSETSSIILYLRDVERLLLQSQRMYNLFNRFLNKLSGSVLVLGSRMVDVENDCGDVDDRLTNLFRYSVEVRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHITEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNAESSKEPQRDEAVGAKTESKSENPAAENRSEAEKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFADIGAMDDIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQRETKEKEKHKQEEEEKENEKEKQEKEKGTEMETENEKKEKENNSEVVTGTKEAEKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 643840 650222 + CcPI632755_01g000830.1 Cco01g0083 168945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0083 873 MobiDBLite consensus disorder prediction 759 817 - -
Cco01g0083 873 MobiDBLite consensus disorder prediction 445 503 - -
Cco01g0083 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 762 IPR027417 -
Cco01g0083 873 MobiDBLite consensus disorder prediction 445 486 - -
Cco01g0083 873 Gene3D - 694 772 - -
Cco01g0083 873 Gene3D - 521 693 IPR027417 -
Cco01g0083 873 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 521 696 - -
Cco01g0083 873 Pfam AAA+ lid domain 714 758 IPR041569 -
Cco01g0083 873 Coils Coil 753 801 - -
Cco01g0083 873 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 38 872 IPR051701 GO:0005741(PANTHER)
Cco01g0083 873 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco01g0083 873 MobiDBLite consensus disorder prediction 186 214 - -
Cco01g0083 873 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco01g0083 873 SMART AAA_5 558 695 IPR003593 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0083 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0083 Cco-Chr1:643840 Cco03g0370 Cco-Chr3:4023665 1.10E-144 dispersed
Cco04g2244 Cco-Chr4:35970781 Cco01g0083 Cco-Chr1:643840 1.10E-52 transposed
Cco05g0246 Cco-Chr5:1951592 Cco01g0083 Cco-Chr1:643840 8.80E-60 transposed
Cco09g0234 Cco-Chr9:2100182 Cco01g0083 Cco-Chr1:643840 1.50E-53 transposed
Cco11g0722 Cco-Chr11:7979902 Cco01g0083 Cco-Chr1:643840 1.10E-57 transposed
Cco01g0083 Cco-Chr1:643840 Cco07g0825 Cco-Chr7:19074383 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75