Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0096 ATGCGAAGCCTTCAACTTCTTCCTAATCCATTCTTCTTCAACTCCTTCCATGCCAAAACCCTAACTTCCCCAATCCCCAACCCTAAATCCTTCTCCAGATCTCCCTCTTTCACTCCCGTTAAATCCGTCCTTCAGTGGAATCGGAAGCCCGAGCTCGCCGGTGACACTCCCCGCGTCGTCGTCATCACCTCCGGCAAAGGCGGCGTCGGTAAGACCACCACCACTGCTAATGTCGGCATTTCCTTGGCTCGCCTTGGGTTTTCTGTGGTAGCCATTGATGCCGACGTTGGCCTCCGGAATCTCGACCTTCTTTTAGGGCTTGAGAATCGTGTTAATTACACAGTTGTTGAGGTTCTTAATGGGGATTGCCGGTTGGACCAGGCTTTAGTGAGGGATAAACGATGGTCAAACTTTGAATTGCTTTGTATTTCTAAGCCTAGGTCGAAATTGCCGATTGGTTTTGGTGGGAAAGCCTTGGTTTGGCTTGTGGATGCGTTGAAAGCTAGGCAAGAAGGTTCTCCTGATTTCATTATTATCGATTGTCCAGCTGGAATTGACGCTGGTTTCATTACCGCCATTACTCCAGCCAATGAGGCTATCCTTGTGACCACACCGGATATCACGAGCTTGAGAGACGCTGATCGGGTGACCGGATTGCTCGAATGTGATGGCATTCGGGACATTAAGATGATGGTGAATCGGGTTCGGACTGATATGATCAAAGGGGAGGATATGATGTCTGTGCTAGACGTACAAGAGATGTTGGGATTGGCTTTATTGGGTGTAATTCCTGAGGATTCAGAGGTAATTCGAAGCACAAATAGAGGTTATCCTCTGGTCTTGAACAAGCCACCCACATTGGCGGGTTTGGCCTTTGAGCAGGCAGCTTGGAGGCTTGTTGAACAGGACAGTATGACGGCTGTGATGGTCGAGGAGGAGCCTAAGAAACGAGGTTTTTTCTCATTCTTTGGAGGCTAA 978 48.98 MRSLQLLPNPFFFNSFHAKTLTSPIPNPKSFSRSPSFTPVKSVLQWNRKPELAGDTPRVVVITSGKGGVGKTTTTANVGISLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPIGFGGKALVWLVDALKARQEGSPDFIIIDCPAGIDAGFITAITPANEAILVTTPDITSLRDADRVTGLLECDGIRDIKMMVNRVRTDMIKGEDMMSVLDVQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMTAVMVEEEPKKRGFFSFFGG 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 772414 773391 - CcPI632755_01g000960.1 Cco01g0096 168958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0096 325 CDD MinD 58 299 - -
Cco01g0096 325 Pfam CobQ/CobB/MinD/ParA nucleotide binding domain 60 278 IPR002586 -
Cco01g0096 325 Gene3D - 57 312 IPR027417 -
Cco01g0096 325 FunFam Site-determining protein 56 313 - -
Cco01g0096 325 PANTHER SEPTUM SITE-DETERMINING PROTEIN MIND HOMOLOG, CHLOROPLASTIC-RELATED 41 304 IPR050625 GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0009898(PANTHER)|GO:0016887(PANTHER)|GO:0051782(PANTHER)
Cco01g0096 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 303 IPR027417 -
Cco01g0096 325 NCBIfam septum site-determining protein MinD 58 311 IPR010223 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0096 K03609 - - csv:105435429 606.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0096 Cco-Chr1:772414 Cco04g0229 Cco-Chr4:6018617 1.80E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g759 . . . . . . . . . . . Cma15g01072 . . . . . . . . . . . . Cla01g00093 Cam01g0095 Cec01g0095 Cco01g0096 Clacu01g0093 Cmu01g0095 Cre09g2413 . . . . . Csa05g00107 . . . . . . . . . . . . Cmo15g01130 . . . . . . Bhi12g00779 . . . . . Lcy12g0057 . . . . . . . Lsi09g00079 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009298 0 1 2 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 34