Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0105 ATGCTCTATTTTCCAGCGTCGAAGGCCCACACCAAGCCACGACCCCCCAGCCCACAAGATACCGGCGAAGTCAAGTCTGATGGGGTTGCTTTGTGTTCCATTCGAAACCCTAACTACCATCACGTGCGGCGGCCAGCTTCCTTGATAGAGAATATCAACAGAGGGCTGTCTGAAACCCTAGCTCCAGTCCCTCCTTCTTCCTCCAATCTTTCCTTTGCTGTGCAACATTTCCATTTTCAAGCTGAATTAACTGTTGGCAGGTTCTTTTACCTACTGTGCCACTGGTCAGGTGACCTACATTCTTTGTGCGGCAACTGCAAAGTGCTACATCAGATGACTGAAAGTGCTATGGCGGTAGTCAAACCTGAGATGAAGTCTTACATTTGGCTTCAAACTGCTGACGGCTCAATACAACAAGTTGAAGAAGAGGTTGCTATGTTTTGCCCTATGATTTGTCGGGAAATACTACAAACAGGGATGGGATCCTCCAAAAATTATGCAATATCTCTTCCACAGCGAGTGAATCCTGCTATTTTAGGTTTAATTCTTGACTATTGCAGGTTTCATCAAGTACCAGGTCGCTCCAATAAGGAGCGTAAAACATTTGATGAGAAATTCATTCGCATGGATACAAAAAAGCTGTGTGAGTTGACGTCTGCTGCTGACAGCCTCCAATTGAAACCTTTGGTTGATCTAACTAGTCGAGCACTTGCACGAATTATTGAAGGAAAGACTCCAGAGGAGATAAGGGAGACATTTCATCTACCTGATGATCTCACGGAGGAGGAAAAGCTGGAGCCCTTACGAAACATAACAGATGATCCACGCATTCGGCTCTTAAATCGATTATATGCACGGAAGAGGAAAGAATTAAGAGAAAGAGAGAAGTTGAAGAATGTTGAGATTGAGGAGCGGGTGGATGATAGATCAGTCGATGACCTTTTGTCTTTTATAAATGGAGGAGATGGAGATTCAAAGGCAGTTAAAACAAACAAAAACAAAAAGAAAAATCGGAGGAGAAAAGATCAACAGAAGGATTCTTCTTCAACCAATGAAAACGGGAACCATGATAAAATAGGGGAGTTGGATGCTCTTCCTTGTTGCCAGAATAATGAGTTTAACAAGATTTTGGCGGCATCTCCGAGTAGAACTGTGAAATCACAGGATTCGGCAGCTGCCATGTATTCATCTAAGATTGACTTTGATGATGCTGATATATATGATGATCTAGATCCTGCGATGAAAGAGGAACTTGACAGGGAAGTAGAAGACTTCGCTAGAAGATTGAATTCAGATTGGCCGGAAAGGGTGCAAGAAATTTTATCACTAGGCCAAGAACGAAAACTGGTGACAGTATTAACTGGCAATGGTTCATCACCCAGATTCACAACTCAGTCAATTCAAACGCGCCAGATTACGGGAGAAGCTACTGTTGGAAACTTGGAAGGAAGCAAGAGTTTGCAGGATTTCAGTGTAAATGGTGGATGGGAAGAAGATTTATAA 1503 43.05 MLYFPASKAHTKPRPPSPQDTGEVKSDGVALCSIRNPNYHHVRRPASLIENINRGLSETLAPVPPSSSNLSFAVQHFHFQAELTVGRFFYLLCHWSGDLHSLCGNCKVLHQMTESAMAVVKPEMKSYIWLQTADGSIQQVEEEVAMFCPMICREILQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGRSNKERKTFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYARKRKELREREKLKNVEIEERVDDRSVDDLLSFINGGDGDSKAVKTNKNKKKNRRRKDQQKDSSSTNENGNHDKIGELDALPCCQNNEFNKILAASPSRTVKSQDSAAAMYSSKIDFDDADIYDDLDPAMKEELDREVEDFARRLNSDWPERVQEILSLGQERKLVTVLTGNGSSPRFTTQSIQTRQITGEATVGNLEGSKSLQDFSVNGGWEEDL 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 873173 881573 - CcPI632755_01g001050.1 Cco01g0105 168967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0105 500 PANTHER SKP1 128 266 IPR016897 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006511(InterPro)|GO:0031146(PANTHER)|GO:0097602(PANTHER)
Cco01g0105 500 SMART skp1_3 125 226 IPR001232 GO:0006511(InterPro)
Cco01g0105 500 SUPERFAMILY Skp1 dimerisation domain-like 201 268 IPR036296 GO:0006511(InterPro)
Cco01g0105 500 FunFam SKP1-like protein 21 isoform X1 122 272 - -
Cco01g0105 500 Pfam Skp1 family, tetramerisation domain 128 190 IPR016073 GO:0006511(InterPro)
Cco01g0105 500 MobiDBLite consensus disorder prediction 322 362 - -
Cco01g0105 500 Coils Coil 280 300 - -
Cco01g0105 500 SUPERFAMILY POZ domain 126 190 IPR011333 -
Cco01g0105 500 MobiDBLite consensus disorder prediction 1 25 - -
Cco01g0105 500 Gene3D Potassium Channel Kv1.1; Chain A 121 271 IPR011333 -
Cco01g0105 500 Pfam Skp1 family, dimerisation domain 227 264 IPR016072 GO:0006511(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0105 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g669 . . Bda05g00074 . . . . Bma14g02085 . . . . . . . . Cpe14g00108 . . . . . . . Cla01g00104 Cam01g0103 . Cco01g0105 Clacu01g0101 . Cre09g2404 . . . . . Csa05g00297 Chy09g01209 Cme06g01000 . Blo09g00110 . . . . . . . . . Cma16g00128 . . . Cpe09g00091 . . . . . . . . Cla05g00882 Cam05g0969 Cec05g0973 Cco05g0973 Clacu05g0956 Cmu05g0913 Cre05g0997 . Csa03g01711 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003335 2 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 7 3 2 49