Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0117 | ATGTCGCAATTCGATTGCATACACGTGGACGCCCCAAAACGGAGCCAAACTCTTGATGCCTCTCTCACTCGAAAGGTGGGAGCAGAATTTGTGGGCACATTCATTCTCATATTTGCTGCAACAGCCGCACCCATCGTCAACCAAAAGTACAACTCCGTCATGTCACTGATCGGAAACGCTGCATGCGGCGGCCTAGCGGCAATGGTCGTAATTCTGTCCACGGGACACATATCTGGCGGCCACCTAAACCCGTCACTAACCATCGCCTTGGCAGCCGTCCGCCACTTCCGTTGGGCCCATGTCCCCGCCTACATCATGGCCCAGGTCTCCGCTTCCATCTGCGCCTCCTTCGCTCTTAAAGGCGTTTTTCACCCTTTTATGTCTGGCGGCGTCACCGTCCCCTCCATTGACACTGCCCAGGCCTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTCGTCGTCACCGCTCTCTCTACTGATACTCGAGCCGTTGGAGAGTTGGGCGGAATTGCAGTTGGAGCAACGGTGGTGCTCAACATTCTTATCGCTGGGCCATCCACCGGTGGTTCGATGAACCCGGTGAGGACTCTAGGCCCCGCCGTGGCTGCTGGAAATTATAAACAACTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCGATCGTTGGCGCTGGAACCTACACCGCCGTGAAGCACAAAGATGATGAAATGGATCATGTTCCGCCGCATGTGAGGAGCTTCCGTGGATGA | 756 | 55.03 | MSQFDCIHVDAPKRSQTLDASLTRKVGAEFVGTFILIFAATAAPIVNQKYNSVMSLIGNAACGGLAAMVVILSTGHISGGHLNPSLTIALAAVRHFRWAHVPAYIMAQVSASICASFALKGVFHPFMSGGVTVPSIDTAQAFALEFLITFNLLFVVTALSTDTRAVGELGGIAVGATVVLNILIAGPSTGGSMNPVRTLGPAVAAGNYKQLWVYMVAPTLGAIVGAGTYTAVKHKDDEMDHVPPHVRSFRG | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 963760 | 967178 | + | CcPI632755_01g001170.1 | Cco01g0117 | 168979 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0117 | 251 | ProSitePatterns | MIP family signature. | 81 | 89 | IPR022357 | - | |
Cco01g0117 | 251 | Gene3D | Glycerol uptake facilitator protein. | 5 | 241 | IPR023271 | - | |
Cco01g0117 | 251 | Pfam | Major intrinsic protein | 21 | 229 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco01g0117 | 251 | SUPERFAMILY | Aquaporin-like | 20 | 238 | IPR023271 | - | |
Cco01g0117 | 251 | PRINTS | Major intrinsic protein family signature | 63 | 87 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco01g0117 | 251 | PRINTS | Major intrinsic protein family signature | 144 | 162 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco01g0117 | 251 | PRINTS | Major intrinsic protein family signature | 175 | 197 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco01g0117 | 251 | PRINTS | Major intrinsic protein family signature | 24 | 43 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco01g0117 | 251 | PRINTS | Major intrinsic protein family signature | 212 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco01g0117 | 251 | PRINTS | Major intrinsic protein family signature | 100 | 119 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco01g0117 | 251 | PANTHER | AQUAPORIN NIP2-1 | 17 | 236 | IPR034294 | - | |
Cco01g0117 | 251 | FunFam | Aquaporin NIP2-1 | 14 | 243 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0117 | Cco-Chr1:963760 | Cco07g1289 | Cco-Chr7:26976932 | 4.80E-80 | dispersed | |
Cco01g0116 | Cco-Chr1:955715 | Cco01g0117 | Cco-Chr1:963760 | 2.10E-106 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0117 | K09874 | - | csv:101212485 | 419.468 |