Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0117 ATGTCGCAATTCGATTGCATACACGTGGACGCCCCAAAACGGAGCCAAACTCTTGATGCCTCTCTCACTCGAAAGGTGGGAGCAGAATTTGTGGGCACATTCATTCTCATATTTGCTGCAACAGCCGCACCCATCGTCAACCAAAAGTACAACTCCGTCATGTCACTGATCGGAAACGCTGCATGCGGCGGCCTAGCGGCAATGGTCGTAATTCTGTCCACGGGACACATATCTGGCGGCCACCTAAACCCGTCACTAACCATCGCCTTGGCAGCCGTCCGCCACTTCCGTTGGGCCCATGTCCCCGCCTACATCATGGCCCAGGTCTCCGCTTCCATCTGCGCCTCCTTCGCTCTTAAAGGCGTTTTTCACCCTTTTATGTCTGGCGGCGTCACCGTCCCCTCCATTGACACTGCCCAGGCCTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTCGTCGTCACCGCTCTCTCTACTGATACTCGAGCCGTTGGAGAGTTGGGCGGAATTGCAGTTGGAGCAACGGTGGTGCTCAACATTCTTATCGCTGGGCCATCCACCGGTGGTTCGATGAACCCGGTGAGGACTCTAGGCCCCGCCGTGGCTGCTGGAAATTATAAACAACTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCGATCGTTGGCGCTGGAACCTACACCGCCGTGAAGCACAAAGATGATGAAATGGATCATGTTCCGCCGCATGTGAGGAGCTTCCGTGGATGA 756 55.03 MSQFDCIHVDAPKRSQTLDASLTRKVGAEFVGTFILIFAATAAPIVNQKYNSVMSLIGNAACGGLAAMVVILSTGHISGGHLNPSLTIALAAVRHFRWAHVPAYIMAQVSASICASFALKGVFHPFMSGGVTVPSIDTAQAFALEFLITFNLLFVVTALSTDTRAVGELGGIAVGATVVLNILIAGPSTGGSMNPVRTLGPAVAAGNYKQLWVYMVAPTLGAIVGAGTYTAVKHKDDEMDHVPPHVRSFRG 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 963760 967178 + CcPI632755_01g001170.1 Cco01g0117 168979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0117 251 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cco01g0117 251 Gene3D Glycerol uptake facilitator protein. 5 241 IPR023271 -
Cco01g0117 251 Pfam Major intrinsic protein 21 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0117 251 SUPERFAMILY Aquaporin-like 20 238 IPR023271 -
Cco01g0117 251 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0117 251 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0117 251 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0117 251 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0117 251 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0117 251 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0117 251 PANTHER AQUAPORIN NIP2-1 17 236 IPR034294 -
Cco01g0117 251 FunFam Aquaporin NIP2-1 14 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0117 Cco-Chr1:963760 Cco07g1289 Cco-Chr7:26976932 4.80E-80 dispersed
Cco01g0116 Cco-Chr1:955715 Cco01g0117 Cco-Chr1:963760 2.10E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0117 K09874 - csv:101212485 419.468