Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0118 ATGGGTTTGTTCAAATTCTTTAGAGTTAAGAGAAAATCCAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTCAATTTGAAGAGGGTTTTTTCGCTACAAGGTTTCGCTGGACTGAGATCGAGGCTTTCACTAAGAATTTCTCCGCTCTTGTCGGCTCCGGCGGCTTCAGCAACGTTTATCTTGCTCGGACGGCGCCGGGGATGGCGGCCGCCGTCAAGATTTTGGGCGCTAGTAAGCGGCTCAACCGGATGTTCCGCCAAGAATTGGACATTCTTCTCCAGCTCCGTCACCGGAATATTGTCAATTTCGTTGGGTATTGCGATGAACGAGATGAAGGAGCCTTGGTATTCGAATATGTCCCAAATGGGAACTTACAAGAGAAGCTCCACAGCCGGGCGGCGGCCACGAAGACGGCGGTTCTTCCATGGAAACTCCGGCTACTCATAGCCTTTCAATTAGCTCAAGCAATCGAATACCTCCATGAGAAATGCAGCTTACAAATCGTTCACGGCGATATAAAATCATCGAACATTTTACTGGACGAACGATTCAATTGCAAATTATGCGATTTCGGGTCAGCAAAAATGGGATTTTCATCGTCGGTGGGGAATCCATCCTCGTCGCCGTCGCTGTCGAGCCCCCCCTTCAGAGCGAAGCAATTGATGATGGGATCTCCAGGATACACAGATCCCCAATATCTAAGAACCGGAATCGCTTCAAAGAAAAACGATATTTACAGTTTCGGCGTTGTTCTCTTAGAGCTGATCACCGGAAAAGAGGCTTTCTGTTCGGAGAAAGGTCAGATTCTGACATCAATTTTACCTCCGGCGGTTCGCGACGGCGGAGGAATTAAACCGTCGGAAGTGGCGGAACTTGTCGATCCGCAACTCCGGGGCGATTACGACGGCAATGAAGCCGGTGCGTTGATTTCAATTGCGGCGGCGTGCGTGACGCAACCGCCGGCGCCGAGGCCCACGATCGGAGGCGTGCTGCAGATGATGACGGAGAAGATCGGAAATGTCGGCGACGGGGTATGGGGGGTGAAACGTGGCAGTAAATCATTGGATGTGGGGAGATGGTAA 1083 50.51 MGLFKFFRVKRKSKVADKKTVLDAQFEEGFFATRFRWTEIEAFTKNFSALVGSGGFSNVYLARTAPGMAAAVKILGASKRLNRMFRQELDILLQLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHSRAAATKTAVLPWKLRLLIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDERFNCKLCDFGSAKMGFSSSVGNPSSSPSLSSPPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQILTSILPPAVRDGGGIKPSEVAELVDPQLRGDYDGNEAGALISIAAACVTQPPAPRPTIGGVLQMMTEKIGNVGDGVWGVKRGSKSLDVGRW 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 968591 970032 - CcPI632755_01g001180.1 Cco01g0118 168980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0118 360 Gene3D Phosphorylase Kinase; domain 1 7 119 - -
Cco01g0118 360 SMART serkin_6 45 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0118 360 PANTHER OS01G0253100 PROTEIN 19 336 - GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco01g0118 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0118 360 ProSiteProfiles Protein kinase domain profile. 45 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0118 360 Pfam Protein kinase domain 49 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0118 360 SUPERFAMILY Protein kinase-like (PK-like) 30 334 IPR011009 -
Cco01g0118 360 Gene3D Transferase(Phosphotransferase) domain 1 120 342 - -
Cco01g0118 360 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0118 Cco-Chr1:968591 Cco06g0152 Cco-Chr6:1559540 1.90E-45 dispersed
Cco01g0118 Cco-Chr1:968591 Cco05g1172 Cco-Chr5:10831199 2.90E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86489 PF00069 Pkinase 8.20E-41 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0118 - - - 0.0