Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0119 ATGGAAGAAGCTGCAGGTGGATCCGGATCAGGATTACCTGATCCATCTCAATTATTCGGAGTTTCCACACCGCCGCCGCCTTTAACCGTCGATGCCGCCATGAGTGATTCTCAGCAAGTCGAAGCTGCTTCTCCGATTAGTAGCCGACCTCCAGCAGTACCGTCTTCGTTAAATTATGAGGAACTCATTCGTCTCGGCGGCGGTGGCGGTGGTCAGATGGTGGTTGACGACGAAGAAACTGACCGTAGCGGCGGCGGAAGTGGTGGTAATCGGTGGCCGCGTCAGGAAACGCTTGCTTTGCTTAAAATTAGGTCAGAGATGGATTCCGCGTTTCGTGATGCTACACTCAAAGGACCTCTCTGGGATGAAGTCTCCAGGAAGTTAGGGGAAATGGGGTATAAGAGAAATGCAAAAAAATGCAAAGAGAAATTCGAGAATGTTCAAAAATATTACAAACGCACAAAAGAAGGAAGAGGAGGGCGTCAAGATGGCAAAACCTACAAATTCTTTACGCAACTTGAGGCTCTTCATAACGCAAACGTGGCGCCTTCTTCTTCTTCTTCATTCACACTGCCACAGCCCACCACCGTTGGCTTTGGGATTAGCAACCCTACTCCAATCTCATCCGTTAAAATTTCCACATCTTCTTCACAAAACCCAATGGGAATCTTTTCTCCTCCACCAGATCATTTCACTGTCCGGCCGCCACCCACCGTCGCCGCTCCTATGGGTGTAAGCTTTTCGTCGAACACCTCATCTGCATCCACTGAAGACGATGATAACGATGAAGATGAAGAGATGGGGTTTGATGTTGACCTTGAAGGATTGCCGGAGAATGTAGCGGGTAGTAGCCGGAAGCGGCGGAGAGGGGTGGTTAAAGGAAATGAGTCAAGAACTCATAAGATGATGATGGAGTTTTTCGAGGGTTTGATGAAACAGGTGATGGAGAAACAAGAAGTTATGCAACAGAAGTTTTTGGAAGCGATTGAAAAAAGAGAACAAGATAGGATGGTCAGAGAAGAGAATTGGAAAAGGCAAGAAATGGCTAGGTTGAGTCAAGAACAAGAAAGAATGGCTCAAGAACGGACAATTTCTGCTTCTAGAGATGCTGCCATTATTGCTTTTCTTCAGAAATTTACTGGCCAAACCATTCAATTTTCAGCCCCACAACAACAACAACAATTTGATGTGGCGCCTGTGCCTGTGGCTGTACCTGTATCCGTGGCTGTGTCTGTACCTATGCCTATGCCTGTGCCAGCGCCACTATCTCCTGTCCTCTCTCAGCCATTGCAACCACAAACTCTGCCACAGCCGCCTTCAAATACAATCCCATTGGATCAACCAATGTTTCAGGAAATTAGCCAAGGAGGAGGAGATGGATCTTCAGAACCCATTTCTTCAAGATGGCCAAAACAGGAAGTTCTAGCTTTAATAAAACTGAGAGGTGGGCTTGAATCCAGGTATCAAGAAACAGGTCCAAAGGGTCCTCTGTGGGAAGAGATTTCAGCTGGAATGGCACGGATGGGTTACAAGAGAAGTGCTAAAAGATGTAAAGAGAAATGGGAGAATATCAATAAGTATTTCAAGAAAGTTAAAGAAAGCAACAAAAAACGTCGTGAGGATTCTAAAACCTGCCCTTATTTCAATGAGCTCGATGCTCTTTACCGCAAGAAAATCCTTTCTGCTTCTGCTTCTGATTCTGGTTCCTTTAGTGATACCAACAAATTTGAACAAAACCCAACAACAACAACAACAGATCTTCAACCTCAACCCCATTCTTCCATTCCTCAAGGTTTATCCGCTACTCTTTTTGGTGAAGGAACAGAAGAACAACCATCATCCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTGCAGGACGACATTTACCGACGTCATCTCGATCGAGATGACGACGATGAAAACGACGATTATTGCAGTGATGATGATGATGATTTACTAGAAGAAAAGAGAAACAGTAACATTGATTATAAAATAGAGTTTCAAAGAAGAAACAATGTAGGAAACTCCAATGGCGTTGCGAGTGAGTTTCAATCAATGGCGGTGGTTCAATAG 2082 45.0 MEEAAGGSGSGLPDPSQLFGVSTPPPPLTVDAAMSDSQQVEAASPISSRPPAVPSSLNYEELIRLGGGGGGQMVVDDEETDRSGGGSGGNRWPRQETLALLKIRSEMDSAFRDATLKGPLWDEVSRKLGEMGYKRNAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNANVAPSSSSSFTLPQPTTVGFGISNPTPISSVKISTSSSQNPMGIFSPPPDHFTVRPPPTVAAPMGVSFSSNTSSASTEDDDNDEDEEMGFDVDLEGLPENVAGSSRKRRRGVVKGNESRTHKMMMEFFEGLMKQVMEKQEVMQQKFLEAIEKREQDRMVREENWKRQEMARLSQEQERMAQERTISASRDAAIIAFLQKFTGQTIQFSAPQQQQQFDVAPVPVAVPVSVAVSVPMPMPVPAPLSPVLSQPLQPQTLPQPPSNTIPLDQPMFQEISQGGGDGSSEPISSRWPKQEVLALIKLRGGLESRYQETGPKGPLWEEISAGMARMGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILSASASDSGSFSDTNKFEQNPTTTTTDLQPQPHSSIPQGLSATLFGEGTEEQPSSTKPEDIVNELMELQDDIYRRHLDRDDDDENDDYCSDDDDDLLEEKRNSNIDYKIEFQRRNNVGNSNGVASEFQSMAVVQ 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1002593 1004914 + CcPI632755_01g001190.1 Cco01g0119 168981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0119 693 MobiDBLite consensus disorder prediction 256 272 - -
Cco01g0119 693 Gene3D - 92 153 - -
Cco01g0119 693 Gene3D - 469 530 - -
Cco01g0119 693 FunFam Trihelix transcription factor GT-2 92 153 - -
Cco01g0119 693 PANTHER FI21293P1 68 577 - -
Cco01g0119 693 MobiDBLite consensus disorder prediction 32 54 - -
Cco01g0119 693 ProSiteProfiles Myb-like domain profile. 461 525 IPR001005 -
Cco01g0119 693 SMART sant 88 150 IPR001005 -
Cco01g0119 693 SMART sant 465 527 IPR001005 -
Cco01g0119 693 MobiDBLite consensus disorder prediction 67 94 - -
Cco01g0119 693 CDD GT1 90 155 - -
Cco01g0119 693 MobiDBLite consensus disorder prediction 634 654 - -
Cco01g0119 693 FunFam Trihelix transcription factor GT-2 469 530 - -
Cco01g0119 693 MobiDBLite consensus disorder prediction 564 600 - -
Cco01g0119 693 MobiDBLite consensus disorder prediction 243 296 - -
Cco01g0119 693 MobiDBLite consensus disorder prediction 1 55 - -
Cco01g0119 693 Pfam Myb/SANT-like DNA-binding domain 467 554 IPR044822 -
Cco01g0119 693 Pfam Myb/SANT-like DNA-binding domain 90 176 IPR044822 -
Cco01g0119 693 CDD GT1 467 532 - -
Cco01g0119 693 ProSiteProfiles Myb-like domain profile. 90 148 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0119 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0119 Cco-Chr1:1002593 Cco08g0454 Cco-Chr8:11275473 3.20E-94 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58544 PF13837 Myb_DNA-bind_4 3.50E-23 CL0123 Cco TF