Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0123 ATGGCGACGCCGTCATCGTCCTCAGCATCTTCAGTAAGGTCGTGGAGGACGGCGTTTCTGACTCTGAGAGACGAATCGATCTCTTCTTTAACTTCAATTTCCCAACTTCTCTACGACACCATCTTCTCGCACTCCGATTCCTTAATCGCCGCCGCGCGCTACCTTCCTCCACCAGAAGTTTCATCAGATCTGCTGTTTCTCTTAGAAGTGGCTACTTCTGCTTCCGACTCCGTCCAAGACATTGTGCTTATCTTCACAGATATCATACATCTGATCCACGGTATTTCTTATCAAGTTGCTCTTGAATTTAGTTCTTCCTCTTGGAACCTGCTCCTACAATATTTTGGAGATGTGATCCGAATCCTACTTGGAAAGCTTAATACTCCAGGAAATTATGCTCTAATCAGGCCTGTCTTGGAGTCTTTGGAGTTTGTAAGACACGTTGTCTTTTTACAACAGCGCAACTTTTTACCAGCAGAAGATATTCAGCTCTCAAAGTTCTTGCTTTCTGTGATTGCTGGATCTCAATCAGCAATATTCCCTTCGTCAAATTCAATCATTAGACACGGTTGTACTGCTGAAGTTGTGAAAAGTGTACCCAAATGTAATAGTTTATGGGATGTTCAGGCTGTAGCCTTCGATCTACTTAGTCAGGCCATCACAAGTCTAGGGTCATATCTTCCAGTCGATGTTTGGAAGTCAACAATTCAGGTTATTCGAAAATTGATGGATTTCTTGGCATCTACTAGCTTACTTGTTGAAGACAAGGTGATGTCCAGGTACTATCTGTCTCTTCTGAGATGTCTTCATTTGGTTATAGCAGAACCCAAATGCTCGCTTTCTGACCATGTGTCAGCTTTTGTAGTAGCATTGCGCATGTTCTTTGCCTATGGATTTTCTAACAGGCCCCTGCTTGCTTGTTCAGTTGGTAATCAAGGGAAAGAACCTAGTTTGACTAGTACCAGGTCCAGTTTGGAGGAACCGAAAAAGGAAAATCATAGCGCATATAGGCCCCCACACATGCGTAGAAGAGAAAATTTAAATAAGAAGCAGGCCAATGTTCAAAATTCTCAGAGTTCAATGACTGCAGAGTCTCTTAACTGTGATTTGATATCTTCAGATTCTGATCATGACAGCGATGGGCCAGGCAGAGAGGCTGACATCATTCAGAATGGCAAAGTTCGGGTTGCTGCTATTCTTTGTATACAGGATCTTTGCCAAGCTGACCCCAAAGCATTCACCAGCCAATGGACACTTCTTTTGCCAACTCGGGATGTTCTGCTGCCAAGGAAATTTGATGCAACTTTAATGACATGTCTTCTATTTGATCCTTCTCTAAAGGCCCAGGTAGCATCTGCTGCAGCCCTGGTGGTTATGTTGGATAGGACTACTTCCATTTCCTTACAGATTGCAGAATACAGAGATCCAGCTAAATGTGGATCCTTTATGCCTCTTTCGATTTCCCTTGGGCAGATACTAATGCAACTCCACATAGGTGTTCTGTACTTGATCCAACGTTCAACTCATGGTAAATTGCTGACAATCTTGTTCAAGATTCTTTTGCATCTGATATCATCAACTCCATATCCAAGGATGCCTGAAGAGTTGTTGCCGAACATGGTAAAGGCTTTACAAGCAACAATTGAAGAGGGCTTTCCATTCAAAAGTGATCAAACTGACTTGCTGGCTGCTGCTATCAGTTGCTTAAATGTAGCCTTATCTACTTCTCAGTCATCACCTCATGTAAAAGAGATGCTTTCCAAACAAATATCCACAGCTCAAAAGGGAATCAGTGTTCTTGTCATATTACTTCAATATTCTGAGCAACTAACCAACCCAACCATATGCATTGAGGCTCTTCAGGCCTTAAAAGCTGTATCACACAACTATCCACATATCATGTTTGCTTTCTGGGAACAAGTTTCCTCAGTTGTTTCCAACTTTCTACATGAAGCTGCTCCTGAAGTTTCCACGGGGCAGTGGAGGGTGCAGTCTAGAAACAGTGTTGGAATTATTGGAGAAAAAGTTATAACAGCTGCTGTCAAGGTTTTGGATGAATGTCTTCGAGCAATATCTGGGTTCAAAGGCACGGAGGATCTTTTGGATGATAACCTACTTGATTCTCCATTCACTTCGGACTGCATAAGAATGAAGAAGGTCTCGTCAGCTCCATCATATGAATTAAAGAATTTAGATGAAACTATTGACAGGCCAGAGGAGGTATGTGCAGGAATGAAGCAGTGGTGTGAGGTGATTGAGAAGCATTTACCAAGGAGTTTGGTGCATACTTCTGCTATGGTGAGAGCAGCATCTGTTACATGTTTCGCGGGTATTACTTCCTCTGTTTTCTCCTCTCTCTCTAAAGAAAAGGAGGACTATATATTGTCTTCAGTGGTGAATGCTGCAGTGTATGATGAGGTGCCTTCAGTGAGGTCAGCTGCTTGTCGTGCCATTGGCGTCATATCATGTTTCCCTCAAGTTTCCCAAAGTGCAGAGATTCTTGACAAGTTCATCCATGCTGTTGAGATCAATACTTGTGATTCTTTGGTTTCGGTAAGGGTAACAGCCTCCTGGGCATTGGCAAATATATGCGAGTCAATCCGTCGCTTTTTTGATGATTTTCCTTCGAGACAGCCCACAGATTCAATAGAATGTTCTCATACATTGACACTATTAATTGAGAGCAGTTTGCGTCTGGCAAATGATGGAGACAAGATTAAATCAAATGCTGTCAGAGCTCTTGGAAATCTTTCAAGGTTGATGAAGTTTTCGTGTTTAATTTCCCCCTGTGAGAGGCCTAGAAGCAATTCAATGGTTGCTAATAACTCTGAGGATCTCTTGTCGAAGGGTGATTCAAAAGTACATCCTGGATGCCCATCAAAAAATCTCAATGATACAATTTCGTTCTACAATTTGAGTTTTCTTGAGAGAATAGTTCAGGCATTTATTTCTGGGATCACAACTGGAAATGTGAAGGTCCAGTGGAATGTTTGTCATGCATTAAGCAACTTATTTTTAAATGAAACATTGAGACTGCAGGACATGGACAGGGTGTCATCACTTTTCAATATTCTTTTGCTGCTATTGCGTGATTCCTCTAATTTTAAGGTGAGGATACAAGCTGCTGCTGCTTTATCTGTGCCAGCTTCAGTGTATGGCTATGGGAAGTCTTTTCCAGATGTAGTTCAAGGTCTGGAGCATACAATTGAGAACCTAGAATCAAATCATATTCTTGCTCCAAGTTTCAAGTATAAGGTTGCACTTGAAAAGCAGCTGACTTCAACAATGTTACATGTTTTAAGTCTTGCTGCCAGCACGGACAATCAACCCCTGAAAGATTTTCTGGTCAAAAAAGCAACATTTCTTGAGGAATGGTTCAAGGCACTTTGTTCATCGCTTGGAGAGAGAAGTAATTGGCGTGGTGCTGGCGAAGACAATTCCACCAACAACCAGAAGAGAGAAATGATATCGAAAGCTTTACGGTCACTAACTGAAGTGTATACAAGCAGCAATCATAGTGCAATTTCTCAGAGATTTGAGGACTTGGATAGATGGATTCACTAG 3564 41.95 MATPSSSSASSVRSWRTAFLTLRDESISSLTSISQLLYDTIFSHSDSLIAAARYLPPPEVSSDLLFLLEVATSASDSVQDIVLIFTDIIHLIHGISYQVALEFSSSSWNLLLQYFGDVIRILLGKLNTPGNYALIRPVLESLEFVRHVVFLQQRNFLPAEDIQLSKFLLSVIAGSQSAIFPSSNSIIRHGCTAEVVKSVPKCNSLWDVQAVAFDLLSQAITSLGSYLPVDVWKSTIQVIRKLMDFLASTSLLVEDKVMSRYYLSLLRCLHLVIAEPKCSLSDHVSAFVVALRMFFAYGFSNRPLLACSVGNQGKEPSLTSTRSSLEEPKKENHSAYRPPHMRRRENLNKKQANVQNSQSSMTAESLNCDLISSDSDHDSDGPGREADIIQNGKVRVAAILCIQDLCQADPKAFTSQWTLLLPTRDVLLPRKFDATLMTCLLFDPSLKAQVASAAALVVMLDRTTSISLQIAEYRDPAKCGSFMPLSISLGQILMQLHIGVLYLIQRSTHGKLLTILFKILLHLISSTPYPRMPEELLPNMVKALQATIEEGFPFKSDQTDLLAAAISCLNVALSTSQSSPHVKEMLSKQISTAQKGISVLVILLQYSEQLTNPTICIEALQALKAVSHNYPHIMFAFWEQVSSVVSNFLHEAAPEVSTGQWRVQSRNSVGIIGEKVITAAVKVLDECLRAISGFKGTEDLLDDNLLDSPFTSDCIRMKKVSSAPSYELKNLDETIDRPEEVCAGMKQWCEVIEKHLPRSLVHTSAMVRAASVTCFAGITSSVFSSLSKEKEDYILSSVVNAAVYDEVPSVRSAACRAIGVISCFPQVSQSAEILDKFIHAVEINTCDSLVSVRVTASWALANICESIRRFFDDFPSRQPTDSIECSHTLTLLIESSLRLANDGDKIKSNAVRALGNLSRLMKFSCLISPCERPRSNSMVANNSEDLLSKGDSKVHPGCPSKNLNDTISFYNLSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQDMDRVSSLFNILLLLLRDSSNFKVRIQAAAALSVPASVYGYGKSFPDVVQGLEHTIENLESNHILAPSFKYKVALEKQLTSTMLHVLSLAASTDNQPLKDFLVKKATFLEEWFKALCSSLGERSNWRGAGEDNSTNNQKREMISKALRSLTEVYTSSNHSAISQRFEDLDRWIH 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1047072 1072964 - CcPI632755_01g001230.1 Cco01g0123 168985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0123 1187 MobiDBLite consensus disorder prediction 324 343 - -
Cco01g0123 1187 Pfam Domain of unknown function (DUF4042) 393 580 IPR025283 -
Cco01g0123 1187 PANTHER MALARIA ANTIGEN-RELATED 2 1184 IPR052107 -
Cco01g0123 1187 Gene3D - 387 709 IPR011989 -
Cco01g0123 1187 Gene3D - 959 1179 IPR011989 -
Cco01g0123 1187 Gene3D - 736 948 IPR011989 -
Cco01g0123 1187 MobiDBLite consensus disorder prediction 312 343 - -
Cco01g0123 1187 SUPERFAMILY ARM repeat 391 1172 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0123 K24815 - - csv:101212003 2114.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0578 . . . . Csa05g00135 . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00119 Cam01g0122 Cec01g0122 Cco01g0123 Clacu01g0118 Cmu01g0120 Cre09g2386 Lsi09g00107 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007418 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 2 1 1 35