Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0128 | ATGAATTTTGGAGTGAATAGGCTCCAAACTCACCATCTAGAACCTAGAAATAGGTTGGATTTGATCATGATGGACCCGCCGGAGCCGGAGGAGGAAGCTGCCGGTGGTTCTAATAGCGGCGGCGGCGGCGGAAGAGGAGGAGGAGAAGTTGAAAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGGAAATTAAATCGGCTTGTTATTCCAAAGCAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGAAACGGCAAATCATGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAACGCCTCGACGCCGGCGATATCGTCTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGCCGCCCTGAACTCCCCATCCACCATCATCACCACCACCACTATCCCACCGCCACCTCTCTCCGACCGAGCATCGTCGTCCCGAGCGGTGGTGCTACCACTTGGGGGCCATTGGTCTGGCAGCCACTCGGCGCAACAACAGCCGGATACCACCATCAGCCAGCTGCCGTAACACCGCGGGACCACACACACTTGTCGCAAATAAACAACAACAATAACAACAACAATGTGAATGGGATGTGTTGTCCGTACGGATATGGGAGTGTTGAAACAACAACTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAGATCAAGAAGGACAACTCCAAGATTAGGGGAAGAGGAATTTGAGTTGGAAATGGAAGGGAATAATAATTATCAGATGCAGCAGGAGTATTGTAGTAATGGAGGGGTTGCTCCAATGGTGATTCTACAAGGAAATTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAACAATAATAGTGAAGAAGATATACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTACAAACCCCAAAACCACTACTACTACCACTCAATTCCAATTGCCTTCTTCAATTTACAAGTAA | 1152 | 45.49 | MNFGVNRLQTHHLEPRNRLDLIMMDPPEPEEEAAGGSNSGGGGGRGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHHYPTATSLRPSIVVPSGGATTWGPLVWQPLGATTAGYHHQPAAVTPRDHTHLSQINNNNNNNNVNGMCCPYGYGSVETTTSGLVYLRTELGGRSRRTTPRLGEEEFELEMEGNNNYQMQQEYCSNGGVAPMVILQGNCMEDHKLKTTNNNNNNNSEEDIPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSTNPKTTTTTTQFQLPSSIYK | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1127062 | 1128213 | + | CcPI632755_01g001280.1 | Cco01g0128 | 168990 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0128 | 383 | FunFam | B3 domain-containing protein | 49 | 170 | - | - | |
Cco01g0128 | 383 | SUPERFAMILY | DNA-binding pseudobarrel domain | 53 | 162 | IPR015300 | - | |
Cco01g0128 | 383 | MobiDBLite | consensus disorder prediction | 26 | 50 | - | - | |
Cco01g0128 | 383 | CDD | B3_DNA | 54 | 143 | IPR003340 | GO:0003677(InterPro) | |
Cco01g0128 | 383 | Gene3D | - | 50 | 172 | IPR015300 | - | |
Cco01g0128 | 383 | SMART | B3_2 | 56 | 161 | IPR003340 | GO:0003677(InterPro) | |
Cco01g0128 | 383 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 39 | 344 | IPR044800 | GO:0003700(InterPro) | |
Cco01g0128 | 383 | Pfam | B3 DNA binding domain | 56 | 160 | IPR003340 | GO:0003677(InterPro) | |
Cco01g0128 | 383 | ProSiteProfiles | B3 DNA-binding domain profile. | 56 | 161 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0128 | Cco-Chr1:1127062 | Cco10g1857 | Cco-Chr10:32196066 | 8.10E-39 | dispersed | |
Cco03g1000 | Cco-Chr3:15226349 | Cco01g0128 | Cco-Chr1:1127062 | 6.50E-34 | transposed | |
Cco05g2568 | Cco-Chr5:33928450 | Cco01g0128 | Cco-Chr1:1127062 | 3.90E-40 | transposed | |
Cco06g0234 | Cco-Chr6:2499661 | Cco01g0128 | Cco-Chr1:1127062 | 6.90E-53 | transposed | |
Cco06g1417 | Cco-Chr6:24673747 | Cco01g0128 | Cco-Chr1:1127062 | 1.00E-22 | transposed | |
Cco01g0128 | Cco-Chr1:1127062 | Cco07g0865 | Cco-Chr7:20059607 | 1.90E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58546 | PF02362 | B3 | 8.00E-29 | CL0405 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0128 | K09287 | - | csv:101211271 | 528.48 |