Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0128 ATGAATTTTGGAGTGAATAGGCTCCAAACTCACCATCTAGAACCTAGAAATAGGTTGGATTTGATCATGATGGACCCGCCGGAGCCGGAGGAGGAAGCTGCCGGTGGTTCTAATAGCGGCGGCGGCGGCGGAAGAGGAGGAGGAGAAGTTGAAAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGGAAATTAAATCGGCTTGTTATTCCAAAGCAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGAAACGGCAAATCATGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAACGCCTCGACGCCGGCGATATCGTCTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGCCGCCCTGAACTCCCCATCCACCATCATCACCACCACCACTATCCCACCGCCACCTCTCTCCGACCGAGCATCGTCGTCCCGAGCGGTGGTGCTACCACTTGGGGGCCATTGGTCTGGCAGCCACTCGGCGCAACAACAGCCGGATACCACCATCAGCCAGCTGCCGTAACACCGCGGGACCACACACACTTGTCGCAAATAAACAACAACAATAACAACAACAATGTGAATGGGATGTGTTGTCCGTACGGATATGGGAGTGTTGAAACAACAACTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAGATCAAGAAGGACAACTCCAAGATTAGGGGAAGAGGAATTTGAGTTGGAAATGGAAGGGAATAATAATTATCAGATGCAGCAGGAGTATTGTAGTAATGGAGGGGTTGCTCCAATGGTGATTCTACAAGGAAATTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAACAATAATAGTGAAGAAGATATACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTACAAACCCCAAAACCACTACTACTACCACTCAATTCCAATTGCCTTCTTCAATTTACAAGTAA 1152 45.49 MNFGVNRLQTHHLEPRNRLDLIMMDPPEPEEEAAGGSNSGGGGGRGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHHYPTATSLRPSIVVPSGGATTWGPLVWQPLGATTAGYHHQPAAVTPRDHTHLSQINNNNNNNNVNGMCCPYGYGSVETTTSGLVYLRTELGGRSRRTTPRLGEEEFELEMEGNNNYQMQQEYCSNGGVAPMVILQGNCMEDHKLKTTNNNNNNNSEEDIPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSTNPKTTTTTTQFQLPSSIYK 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1127062 1128213 + CcPI632755_01g001280.1 Cco01g0128 168990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0128 383 FunFam B3 domain-containing protein 49 170 - -
Cco01g0128 383 SUPERFAMILY DNA-binding pseudobarrel domain 53 162 IPR015300 -
Cco01g0128 383 MobiDBLite consensus disorder prediction 26 50 - -
Cco01g0128 383 CDD B3_DNA 54 143 IPR003340 GO:0003677(InterPro)
Cco01g0128 383 Gene3D - 50 172 IPR015300 -
Cco01g0128 383 SMART B3_2 56 161 IPR003340 GO:0003677(InterPro)
Cco01g0128 383 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 344 IPR044800 GO:0003700(InterPro)
Cco01g0128 383 Pfam B3 DNA binding domain 56 160 IPR003340 GO:0003677(InterPro)
Cco01g0128 383 ProSiteProfiles B3 DNA-binding domain profile. 56 161 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0128 Cco-Chr1:1127062 Cco10g1857 Cco-Chr10:32196066 8.10E-39 dispersed
Cco03g1000 Cco-Chr3:15226349 Cco01g0128 Cco-Chr1:1127062 6.50E-34 transposed
Cco05g2568 Cco-Chr5:33928450 Cco01g0128 Cco-Chr1:1127062 3.90E-40 transposed
Cco06g0234 Cco-Chr6:2499661 Cco01g0128 Cco-Chr1:1127062 6.90E-53 transposed
Cco06g1417 Cco-Chr6:24673747 Cco01g0128 Cco-Chr1:1127062 1.00E-22 transposed
Cco01g0128 Cco-Chr1:1127062 Cco07g0865 Cco-Chr7:20059607 1.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58546 PF02362 B3 8.00E-29 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0128 K09287 - csv:101211271 528.48