Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0136 ATGGCGTCTTCCCTCTCCACCTATCATCAACATCATCTTCTTTCTCCTTCATTTTCTTCCAAAATTACTGCTAATTCCAAGCATCTTTCCTCTCCATTTCTCACTTCACCCTCTTCTGGGTTGTCTTCAAATTTCAATTTCTCGCTTCGGTTCCTCAGCAATGGCCAATCTTCCTCCCTCATCTCTCCCACTCCAAGGCGTCTCAGTATTGTCTCAATGGCCCCTCCTAAAGCCAAGCCCGGTGGAAAATCCAAGAAGGTAATTGGGATGATAAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTAGGCCCTGCTCTTGGTTCGAAGGGTGTTAATATTATGGCCTTCTGTAAGGATTACAATGCCAAGACAGCTGACAAGGCCGGCTACGTTATTCCAGTCGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTGAAGACTCCACCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAAGGATCAAAAGATCCGAAGGGAGAAAAAGTGGGAAAGATAACCATTGAACAGTTGCGCGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATAGCAGGTACAGCAGCCAATATGGGAATTGAGGTTGACCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAG 705 44.82 MASSLSTYHQHHLLSPSFSSKITANSKHLSSPFLTSPSSGLSSNFNFSLRFLSNGQSSSLISPTPRRLSIVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1246073 1249788 - CcPI632755_01g001360.1 Cco01g0136 168998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0136 234 Pfam Ribosomal protein L11, N-terminal domain 91 148 IPR020784 -
Cco01g0136 234 FunFam 50S ribosomal protein L11 84 151 - -
Cco01g0136 234 PANTHER 60S RIBOSOMAL PROTEIN L12 75 229 IPR000911 GO:0003735(PANTHER)|GO:0003735(InterPro)|GO:0005762(PANTHER)|GO:0005840(InterPro)|GO:0006412(PANTHER)|GO:0006412(InterPro)|GO:0015934(PANTHER)|GO:0070180(PANTHER)
Cco01g0136 234 SUPERFAMILY Ribosomal protein L11, C-terminal domain 149 222 IPR036769 -
Cco01g0136 234 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 81 166 IPR036796 -
Cco01g0136 234 CDD Ribosomal_L11 91 221 IPR000911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g0136 234 ProSitePatterns Ribosomal protein L11 signature. 208 222 IPR020785 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g0136 234 Hamap Large ribosomal subunit protein uL11 [rplK]. 87 223 IPR000911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g0136 234 Gene3D - 154 234 IPR036769 -
Cco01g0136 234 FunFam 50S ribosomal protein L11 152 223 - -
Cco01g0136 234 Gene3D - 82 153 IPR036796 -
Cco01g0136 234 SMART rl11c 91 222 IPR000911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g0136 234 Pfam Ribosomal protein L11, RNA binding domain 153 221 IPR020783 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g0136 234 NCBIfam 50S ribosomal protein L11 85 222 IPR006519 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0136 K02867 - - csv:101210200 399.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0136 Cco-Chr1:1246073 Cco02g2560 Cco-Chr2:37924844 3.20E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g268 . . . . . . . . . . . Cma15g01332 . Car15g01197 . . . . . . . . . . . . . . . . . . . . . . Csa05g00149 Chy09g01346 . . . . . . . . . . . Cmo15g01394 . . . . . . Bhi12g00069 . . Lac11g1879 Hepe06g1420 . Lcy12g1498 Cla01g00132 Cam01g0134 Cec01g0135 Cco01g0136 Clacu01g0130 Cmu01g0132 Cre09g2373 Lsi09g00123 . . Cme09g01894
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012293 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29