Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0147 ATGGAGGTTGTTTCTCCGTTCAATGGCTGCTCCGGCAACACCGCCGGAAAAGTCATCATCTGCAAAGCTGCCGTCGCTCGGGGTCCCGGCGAGCCGTTGGTCATCGAACAAATCCGGGTCGACCCGCCCCAGAAAATGGAGGTTCGAGTCAAAATCCTCTTCACTTCCATTTGCCATACCGATCTCAGCGCTTGGAAAGGAGAGAATGAATCCCAAAGAGCTTATCCTCGTATTTTTGGCCATGAAGCCGTCGGGATTGTGGAGAGTGTAGGGGAGGGGGTGACGGAGCTGGCGGCGGGGGATCACGTGATTCCTCTATTCAACGGGGAGTGTGGCACGTGCCGATGTTGCAAGAACCCGACCACGAACTTTTGCGAGAAGATGGGAGTGGATCCAACGAAAAGTACGATGGTCGGGGACGGGAAAACCCGGTTCACGACGGCGGACGAACGACGGCAGCCGATTTACCACTTTCTAAACACGTCAACATTCAGCGAGTTCACGGTGGTGAACTCAGCTTGTGTCGTCAAGATTGACTCGGAAGCTCCCATCAAGAAGATGACTTTGCTAAGCTGTGGCCTTTCCACTGGAGTGGGAGCCGCGTGGAATACTGCGAACGTGGAAGCTGGATCAACGGTCGCGATTTTTGGATTGGGAGCCGTTGGACTTGCTGTTGCCGAAGGAGCAAGAGCCCGCGGAGCTTCTAAAATTATTGGTGTCGATGTCAATCCACAGAAGGCTATCATGGGGAAGCAATTGGGAATCACCGACTTTATAAACCCCAGAGACTCCGACAAACCCGTCCACGAGAAAATCATGGAGATTACAAATGGAGGCGTGGACTACAGCTTTGAATGTGTTGGAAATGTGGAGGTTTTCCGATCGGCTTTCTTGTCTACTTACATTGGATGCGGAACTACGGTGATGTTGGGTATTCACACAAGCCCAAAAATGATGCCTCTTCATCCAATGGAGTTGTTTAGTGGGCGTAAAGTAGTAGCTTCCATTTTTGGAGGCTTTAAAGGCAGGACTCAACTTCCTCATTTTGCCAAACAATGCACCCAAGGGGTAAATCATTTTGACCATATCTGGACTCACTCTCTTCCTCCGGTTCCTTCCTTTTCCTCATCTTCCATCCCAATTTTTATCATGACCGTTCCTGCTTCCGGTTTTATGATGGTAAACGGCGGATCAAGCTGTCTCCCACTCCCCCCAGATGTCGAGAATCAGACCGTCTCCGACCTGGTGAAACAATCCGAGTCTAATTTGAAAGAAGGCAATCTTTACTATGTTGTTTCTAATCGGTGGTATAGAAGATGGCAATTATATGTCGGACTGTCCACTGAAGAATTTTCTAGCAAAGATCATTCCTCTGATTCCCAACACTGTAATATGGTTCCTCCAAACGTGGTTGAAAGACCCGGCCCTATTGATAATTCAGATATAATCGTTAATGGAAGTGATTCTTCTAAGAACAATGATTTAGAGCTAAAAAGTTTTTTGGAGGAACGACGGGATTATGTTTTGGTTCCTAGTGAAGTGTGGGAAAAGCTTTATGATTGGTACAAAGGGGGGCCACCGTTACCAAGAAAGATGATATCTGTAGGTGTCAATCAAAAGAATTTTTCTGTGGAGGTTTATCTACTTTGTCTAAAATTGATTGATGCCAGAGATGCAAGTGAATGCACCATACGGTTGAGCAAGAAGGCCACCATATTTGATCTTCGTGAGAAGGTGTGTGCACTTAAAGGAATAAAGCAAGAAAAGGCATGTATATGGGACTACTTCAACCAGCAGAAACAATTAATATTGGATCCAACAACTCAAACCCTCGAAGAACTAAACTTGCAGATGAATCAACATATCCTCCTTGAAGTTGATGGACCTACTCCTCAGACCGGCATGGATGCCACTCGAAACGAGTTAGCTTTGGTAGCCCTTGAACCTTCAAGGTCAGCTCTGTCAATTGCAGGGGGGCCAGTGATGTCAAATGGGCATTCATCCGGTTATGGTTACCAGGGAAGTTCTTTAAGCACATCAGTTTCTGACATCGATGATAGAAATGATCTTAGTAATACTGCAAAGAAAAAAGAGAAGGGTGGTTTGGCAGGGCTGCAGAATTTAGGAAATACATGTTTTATGAATAGTGCCCTTCAATGTTTAGTTCACACGCCACCCCTTGTAGAGTATTTTTTACAAGATTATTCTGAAGAGATCAATGCAGAGAATCCTTTGGGAATGCACGGAGAATTAGCCCTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTCGGGACAAACCACAATTGCACCACGTGTATTCAAGGGAAAGTTAGCTCGGTTTGCTCCTCAGTTCAGTGGTTATAACCAGCATGATTCCCAAGAACTTCTTGCCTTCTTACTGGATGGACTGCATGAGGATCTGAATCGTGTTAAGCGAAAGCCTTATTTTGAAACAAAGGATTCTGATGGTCGACCAGATGCAGAAGTTGCAGATGAGTGTTGGAGATACCATAAAGCAAGGAATGACTCTTTAATTGTGGATGTTTGTCAAGGTCAATATAAGTCAACATTGGTTTGTCCAGTTTGTGGAAAAATCTCAATTACTTTTGATCCATTTATGTATTTATCATTGCCACTACCTTCAACTGTCACCCGCAGTGTGACAGTGACTGTGTTCTATGGTGACGGTAGTGGCCTTCCAATGCCATACACTGTGACAGTGCAAAGACATGGTTACACCAAAGATCTCACCAATGTATTGGCTTCTGCATGCTGCTTGAAGAGTGATGAAAATCTTCTGCTCGCAGAGGTTTATGATAACCGTATTTTCCGATATTTGGATAACCCTCTTGAATCTTTGACTTCAATTAAAGATGAAGAGTATCTAGTTGCCTATCGCCTTCCGAAAAGAGAGTCTGGAAGACCAAAGCTGGAGATCATTCACAGATCGCTGGAAAAATGCTCCATGGACCGTGTGAAGGGAATGGAGAGAAAGCTTTTTGGAACTCCTCTAGTCACATGTTTGGGGGAAGACTTCCATAGTGGAGCCGACATAAATGCAGCTGTGTCTAAGATCCTATTGCCGCTGAGGAGAACATACCCTTCAACTAAAGCTCATGGTCATGGTAGCAAAGAAAATGGCTTTGTTTCTGAAATGAATGATGAACCAGGCAACTGCGGTCCTCAGTCTGTTTCTAGGAGTCAGTCAATTGACATTGAAGTAGAGGAAGCATCTGAAAAAGAGTCATCCTTTCAGCTTCTTTTAACGGATGATAAGGGTTTGAGCTGCAAGCCAATTGACAAGGATTCTACTATAAAATATGGTTCACTTATAAAGGTTTTCTTAGATTGGAACGACAGAGAACATGAATTATATGATGTGAGCTACATTAAGGATCTTCCTCCTGTTCACCAGACAAGGTTCATGAAGAAAACACGGCAGGAAGCAATCTCTTTGTTTTCTTGTTTGGAAGCATTCCTGACTGAAGAACCTTTAGGTCCTGATGATATGTGGTACTGCCCTAGGTGCAAGGAGCATAGACAGGCTACAAAGAAGTTAGACTTGTGGAAGTTGCCAGAGATTATTGTTTTTCACTTGAAGCGTTTTTCATATAGCAGATTCCTTAAAAACAAACTTGATACCTTTGTTGATTTCCCCATTCACAATCTTGATTTGAGTAAATATGTCAAAAGCAATGATGGAAAATCTTACTTGTACAACCTATATGCCATTAGCAACCATTATGGTGGTCTTGGTGGTGGGCACTACACTGCATACGCAAAGTTAATCGATGAGAAGAGATGGTACCACTTTGATGACAGCCACGTTTCCCCGGTTGGCGAAGAAGAGATCAAGACCTCAGCTGCTTATTTGTTGTTCTATCAAAGAAAGTATTTGAAGGCTGACGACAAATATCCAACGAAAGAAGTCATTGCAATAGGAGAAAGAATGAAGAGATGGGAAGAAATAGAGATAGGCCATTGCAATAGGAGAAAGAATGAAGAGATGGGAAGAAATAGAGTTAGGCCATGTGATGGAGGTAGAAAAAGAGATGGGCGAGGGAAAGAGGCGATCGATCTGATTACTAATGAGTTTCATGAGCGTCGATTTTGCTTTGAAGGTTGCTTAAGTATAGAATTTAACCCCTACGACTAG 4158 43.92 MEVVSPFNGCSGNTAGKVIICKAAVARGPGEPLVIEQIRVDPPQKMEVRVKILFTSICHTDLSAWKGENESQRAYPRIFGHEAVGIVESVGEGVTELAAGDHVIPLFNGECGTCRCCKNPTTNFCEKMGVDPTKSTMVGDGKTRFTTADERRQPIYHFLNTSTFSEFTVVNSACVVKIDSEAPIKKMTLLSCGLSTGVGAAWNTANVEAGSTVAIFGLGAVGLAVAEGARARGASKIIGVDVNPQKAIMGKQLGITDFINPRDSDKPVHEKIMEITNGGVDYSFECVGNVEVFRSAFLSTYIGCGTTVMLGIHTSPKMMPLHPMELFSGRKVVASIFGGFKGRTQLPHFAKQCTQGVNHFDHIWTHSLPPVPSFSSSSIPIFIMTVPASGFMMVNGGSSCLPLPPDVENQTVSDLVKQSESNLKEGNLYYVVSNRWYRRWQLYVGLSTEEFSSKDHSSDSQHCNMVPPNVVERPGPIDNSDIIVNGSDSSKNNDLELKSFLEERRDYVLVPSEVWEKLYDWYKGGPPLPRKMISVGVNQKNFSVEVYLLCLKLIDARDASECTIRLSKKATIFDLREKVCALKGIKQEKACIWDYFNQQKQLILDPTTQTLEELNLQMNQHILLEVDGPTPQTGMDATRNELALVALEPSRSALSIAGGPVMSNGHSSGYGYQGSSLSTSVSDIDDRNDLSNTAKKKEKGGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLQDYSEEINAENPLGMHGELALAFGELLRKLWSGQTTIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDSDGRPDAEVADECWRYHKARNDSLIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRSVTVTVFYGDGSGLPMPYTVTVQRHGYTKDLTNVLASACCLKSDENLLLAEVYDNRIFRYLDNPLESLTSIKDEEYLVAYRLPKRESGRPKLEIIHRSLEKCSMDRVKGMERKLFGTPLVTCLGEDFHSGADINAAVSKILLPLRRTYPSTKAHGHGSKENGFVSEMNDEPGNCGPQSVSRSQSIDIEVEEASEKESSFQLLLTDDKGLSCKPIDKDSTIKYGSLIKVFLDWNDREHELYDVSYIKDLPPVHQTRFMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEIIVFHLKRFSYSRFLKNKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHYGGLGGGHYTAYAKLIDEKRWYHFDDSHVSPVGEEEIKTSAAYLLFYQRKYLKADDKYPTKEVIAIGERMKRWEEIEIGHCNRRKNEEMGRNRVRPCDGGRKRDGRGKEAIDLITNEFHERRFCFEGCLSIEFNPYD 1385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1311629 1333324 - CcPI632755_01g001470.1 Cco01g0147 169009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0147 1385 FunFam alcohol dehydrogenase 1-like isoform X1 29 196 - -
Cco01g0147 1385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 185 356 IPR036291 -
Cco01g0147 1385 SMART dusp 422 536 IPR006615 GO:0004843(InterPro)
Cco01g0147 1385 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 481 1298 IPR050185 -
Cco01g0147 1385 Pfam Alcohol dehydrogenase GroES-like domain 45 178 IPR013154 -
Cco01g0147 1385 SUPERFAMILY GroES-like 14 205 IPR011032 -
Cco01g0147 1385 Pfam DUSP domain 427 533 IPR006615 GO:0004843(InterPro)
Cco01g0147 1385 Pfam Zinc-binding dehydrogenase 220 339 IPR013149 -
Cco01g0147 1385 ProSiteProfiles DUSP domain profile. 403 533 IPR006615 GO:0004843(InterPro)
Cco01g0147 1385 FunFam S-(hydroxymethyl)glutathione dehydrogenase 197 335 - -
Cco01g0147 1385 Gene3D - 197 335 - -
Cco01g0147 1385 SUPERFAMILY Cysteine proteinases 701 1297 IPR038765 -
Cco01g0147 1385 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 703 1298 IPR028889 -
Cco01g0147 1385 SUPERFAMILY DUSP-like 401 533 IPR035927 -
Cco01g0147 1385 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1240 1257 IPR018200 GO:0004843(InterPro)
Cco01g0147 1385 Pfam Ubiquitin carboxyl-terminal hydrolase 703 1295 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cco01g0147 1385 Gene3D - 547 631 - -
Cco01g0147 1385 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 80 94 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cco01g0147 1385 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 704 719 IPR018200 GO:0004843(InterPro)
Cco01g0147 1385 CDD Peptidase_C19R 1143 1296 - -
Cco01g0147 1385 Gene3D Cysteine proteinases 686 896 - -
Cco01g0147 1385 Gene3D - 393 546 IPR035927 -
Cco01g0147 1385 Gene3D - 24 369 - -
Cco01g0147 1385 Gene3D Cysteine proteinases 1058 1303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0147 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0147 Cco-Chr1:1311629 Cco03g0245 Cco-Chr3:2682554 7.30E-231 dispersed
Cco01g0147 Cco-Chr1:1311629 Cco02g2408 Cco-Chr2:36448190 1.60E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g254 . . . . Bpe05g00386 . Bma07g01033 . . . Cma02g00945 Cma15g01322 Car02g00694 Car15g01187 . . Cpe05g00768 . . . . . . . . . . . . . . . Cone12ag0581 . . . Csa05g00159 Chy09g01339 . . . . Bda09g00635 Bpe08g00906 . Bma05g00537 . . Cmo02g00954 Cmo15g01385 . . . . . . Bhi12g00080 . . Lac11g1903 Hepe06g1432 . Lcy12g1511 Cla01g00141 Cam01g0146 Cec01g0142 Cco01g0147 Clacu01g0141 Cmu01g0141 Cre09g2365 Lsi09g00132 . . Cme09g01886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40