Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0161 ATGGCTTCTTCTCCCCTCGCTTCCCTTTCCCCTGCTTCTCCTGCTGATTCCATTTCCGTAAAGCGAGTCGGGACTCACCATGGGAGCTTCCATTGCGATGAAGCGCTTGGTTGCTTCATGATTCGTTTGACGGATAAGTTCTCTAATGCTCAAATTGTCCGAACCCGTGATCCCCAGGTATTAGAAGGTCTTGATGCTGTTCTTGATGTTGGGGGCGTATATGATCCAAGTCGTGATCGATATGATCATCATCAAAAGGGGTTTGAAGAGGTTTTTGGCCATGGTTTCTCCACTAAGCTTAGCAGCGCTGGTCTTGTTTATAAGCATTTTGGGAAGGAGATTATTGCGAAGGAACTGCAAGTTGATGAAGGGCATCCAGATGTGCACAGGCTATTTTTGGCTGTTTACAAAAGTTTCATGGAGGCAATTGATGCTGTAGATAATGGCATTAATCAGTATGATACGGACAAACCACCAAAATATGTGAATAACACACACCTATCTTCAAGGGTGGGGAGACTGAATCTGGACTGGATAGACCCTGATCAGTCACCCGAGAATGAGAATAAGGCCTTCGAGAAAGCAATGGCTCTGGCTGGCAGTGAGTTCTTAGATAGTGTTAGATTTCATGCAAAGTCATGGCTACCAGCTAGGTCAATTGTGATGGGATGTCTTGCAGCAAGACATGATATTGACCCTAGTGGAGAAATAATGGTTTTGACAATGTTTTGCCCTTGGAAACTTCATCTATTTGAGCTCGAACAGGAGTTGAAGATTGAAAATTCGATAAAATATGTGCTCTATCAAGACGATAGAAGCAAACATTGGCGAGTGCAGGCAGTGGCAGTATCTCCTGACAGATTTGAGAGTCGTAGGCCTCTGCCTGCCCAATGGCGAGGTTTAAGGGATGAGGAACTTTCAAAAGAGTCTGGGATACCTGGTTGTGTGTTTGTTCATATGAGTGGCTTTATTGGTGGAAATCAAACTTATGAAGGGGCTCTTGCCATGGCGAAACATGCATTGAAGCTGTAG 1032 44.67 MASSPLASLSPASPADSISVKRVGTHHGSFHCDEALGCFMIRLTDKFSNAQIVRTRDPQVLEGLDAVLDVGGVYDPSRDRYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKEIIAKELQVDEGHPDVHRLFLAVYKSFMEAIDAVDNGINQYDTDKPPKYVNNTHLSSRVGRLNLDWIDPDQSPENENKAFEKAMALAGSEFLDSVRFHAKSWLPARSIVMGCLAARHDIDPSGEIMVLTMFCPWKLHLFELEQELKIENSIKYVLYQDDRSKHWRVQAVAVSPDRFESRRPLPAQWRGLRDEELSKESGIPGCVFVHMSGFIGGNQTYEGALAMAKHALKL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1520050 1522680 + CcPI632755_01g001610.1 Cco01g0161 169023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0161 343 Pfam Uncharacterised protein family (UPF0160) 23 341 IPR003226 -
Cco01g0161 343 PANTHER METAL DEPENDENT HYDROLASE - RELATED 18 342 IPR003226 GO:0005634(PANTHER)|GO:0005737(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0161 K25877 - - csv:101203739 659.833
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g226 . . . . . . . Bma14g00106 . . Cma02g00937 . Car02g00686 . . . Cpe05g00776 . . . . . . . . . . . . . . . . . . . Csa05g00174 Chy09g01323 . Blo03g00809 . Bda07g00147 . . Bpe11g00364 . . . Cmo02g00947 . . . . . . . Bhi12g00096 . . . . . Lcy12g1531 Cla01g00154 Cam01g0159 Cec01g0155 Cco01g0161 Clacu01g0154 Cmu01g0154 Cre09g2352 . . . Cme09g01871
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007612 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 2 2 2 1 1 2 1 1 36