Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0163 ATGAGTTGCGGTTCGGATTTGATGATGTCTGGGAATCCTGAGGCTGATGATCGTGAGGTTGTTGAGAAGGATCCATCTGGACGATATATACGGTATGATGAGATTTTGGGTAAAGGGGCATTCAAGACAGTATACAAAGCATTCGACGAAGTTGGTGGAATCGAAGTTGCTTGGAGTCAAGTGGACATTGAAGATGTTTTGCAGTCACCAGAACAACTTCAAAGATTGTATTCTGAAGTCCATCTGTTGAAGTCACTGAAACATGAAAATATCATCAAGTTCTATAGCTATTGGGTTGATGATAAGCATAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCATAGGAAAGTTGACTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGAGGTTTAACATATTTACATGGTCATGACCCTCCAATCATTCACAGGGATTTGAAATGTGATAATATATTCGTCAATGGGAATACTGGAGAAGTTAAAATTGGAGATCTCGGATTGGCGATTGTCATGCAGCAGCCTACTGCTCGAAGTGTAATTGGCACTCCAGAGTTCATGGCTCCAGAACTTTATGATGAAGACTATAATGAACTTGTTGACATATATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCGGGTATAAAGCCTGCTTCCCTTGAGAAAGTGCTGGACCCTCAAGTTAAGCAATTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGATTACCTGCAAGTGAACTCTTGAAAGATCCTTTCCTTGCAACTGAAAGTCCCAAGGAGCATAGTTCTGAACTTTCAAGGTTATTGAATGAGCAGTTCAAATCTGTAAATCCTCCACTGCTTGGTTCTCATCCAATGGACACAGACCCTAACTCCAGCAAACTCTCAGGCTCAGTGGCCTCATCTGTCAAAAGCAATAATGGAATTTCTCACTTTACAACTCTAGAACTGAAGAGGCTCACTGAGAACAATGAATTGGCACTGAAAGGGGACATGACTGATCATAATACAATGTCATTCTATTTGCGTATTGCTGAATTATATGGTAAATCTAGGAATATCCATTTTGCCTTCTATCTCGACTCTGATACTTCTATGGCAATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCAAATGAAGATGCGACAATCATAGCAAAACTAATCGATGAATTAATTGCCAAGTTTGTTCCTAGCTGGAAACCATGTCCAAACTATTGTGAAGAACAAAATACCCCACATAGTTCTTCTGAAACTCAAGAGGATAAGACCTTCGTTCCTCCTTTTTTCTCTGAGCTAGTACTGTCATCTCCCATGGTGGCTGCTGCTGCAAGGAATAATCCAACGGATTTGACCAAGGTTGAAGATCAAGAAAACAAGCAGTCGATTATTTCGTGTGCTTCTGTGGAATACATTTACTCAACTGTCTCAGATTACAGCATAGGAAAAGGATCAGAATGTGGTGAGTTTGGCCACCCTGAATGTGACAAAGCTTATATTAGCAGTGGAACAATTGATTTAGATGCAGAAGCTGTTGGATCTATTCCGACAATGATTGATTTTGCAAAACCATCTCTAATCTCCTCCTGCTCTGGAGTGTCCAAAGAATTGAGTTTATCTAGCTTTTCTACTCTTTCTCTGGAAGAAAGAGATCACCAAGATGAACTCAAGATGGAGATTGATGCTATTGACTTGCAATACCACCAATGCCTTTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAAGTGCCAAGAAGAGGTGGATGTCAAAGAAGAAAGCTACTGCTATTTGA 1902 40.17 MSCGSDLMMSGNPEADDREVVEKDPSGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFYSYWVDDKHKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILRGLTYLHGHDPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATESPKEHSSELSRLLNEQFKSVNPPLLGSHPMDTDPNSSKLSGSVASSVKSNNGISHFTTLELKRLTENNELALKGDMTDHNTMSFYLRIAELYGKSRNIHFAFYLDSDTSMAIALEMVEQLELSNEDATIIAKLIDELIAKFVPSWKPCPNYCEEQNTPHSSSETQEDKTFVPPFFSELVLSSPMVAAAARNNPTDLTKVEDQENKQSIISCASVEYIYSTVSDYSIGKGSECGEFGHPECDKAYISSGTIDLDAEAVGSIPTMIDFAKPSLISSCSGVSKELSLSSFSTLSLEERDHQDELKMEIDAIDLQYHQCLCELSRMREEAIESAKKRWMSKKKATAI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1536923 1539730 - CcPI632755_01g001630.1 Cco01g0163 169025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0163 633 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 16 462 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cco01g0163 633 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 375 429 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cco01g0163 633 Gene3D Phosphorylase Kinase; domain 1 14 111 - -
Cco01g0163 633 Pfam Protein kinase domain 33 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0163 633 SUPERFAMILY Protein kinase-like (PK-like) 32 288 IPR011009 -
Cco01g0163 633 FunFam Probable serine/threonine-protein kinase WNK1 15 111 - -
Cco01g0163 633 SMART serkin_6 30 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0163 633 FunFam probable serine/threonine-protein kinase WNK9 113 292 - -
Cco01g0163 633 ProSiteProfiles Protein kinase domain profile. 30 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0163 633 MobiDBLite consensus disorder prediction 313 336 - -
Cco01g0163 633 Gene3D Transferase(Phosphotransferase) domain 1 113 294 - -
Cco01g0163 633 MobiDBLite consensus disorder prediction 1 20 - -
Cco01g0163 633 Gene3D - 370 468 - -
Cco01g0163 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0163 633 CDD STKc_WNK 28 287 - -
Cco01g0163 633 MobiDBLite consensus disorder prediction 320 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0163 Cco-Chr1:1536923 Cco05g0080 Cco-Chr5:706460 6.90E-176 dispersed
Cco01g0163 Cco-Chr1:1536923 Cco02g1766 Cco-Chr2:30431794 2.20E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86490 PF00069 Pkinase 9.40E-51 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0163 K08867 - csv:101207748 1152.5