Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0167 ATGTTGGGGAGAAGAAAGAAAGATGGAAATGTATTCTTTGCCTCCGCATCTGGTAACTCCTCTGGAAAGAAGAGTCCAAAGAGAGGAAGAGCCCCAGATGGGTTTGACCCGAGTTTTGGGGTGACCCAGAGTCGTGATTGTGTTTACTGTGGTTGTTTTGGGGTTGGTCAATTTTGTGGACTGATTCGATGTTCCTGTTATGATTATATTGATGGGTTTGTGACCGTGGATCTAACGTCAGGATGCCATGGATTTGAATCGAAGAGGAGGGGTCAAGAGAGAGAACAGATGATGGATTTGATTTACTGTGAGGAGGAAATTGAAAGATTCTACGACACCCGTGAGGAGATCTCCTCTGTGTCTGATTGGGGATCTGATTGCTCTGAGAACTGCAGCACAAGTTTTGGGGATGACGGTGATATTCCTGAAAGTTTAAGATATGTGGGATGGATAGGTAATCTGGAAAGTGTTTGTGAGCGAAGAAACAAGTTCTTCAAATGGATGGGTTTGGATTTGGATCAGACTTTTGACGACAGAGATGAAGAGGAAGGGGATTCGTTCGGGAGGGTTTATCGTGATAGAATTCTGGAAGATTGTGGAACGGTGTTGAGACTTTCCGGTTCTGAAGAGGAGTTGTCTTCAAGTCTTACAATGTCTTCCATGTCAAATGAAGCTCCAGAATCATCAGGAAATGTTTTGGTGGAGGAGAATCATGTTTATACTATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATAGTTTCAGTCAAGATGGAGTGTTGAGCATGTTACGTGAAGTTGGTTCAAACCGATCCTTCAGTTTTGATGAGTTTGAGAGAAACATTGGGCAGTCTCCCTTGGTTCAGCAATTCTTTCGCAAAAATGTTGAAAAGGCTGGGCCTATAGTCAATTCCAGGAAAGAGGCAAAGAAGGGTTGGCTGAGAAAATTGGGTGCGGTTGCTTGTATAGTTGACAATGGGGTGGGCGCAATGAAAAACGGTGCTTCCAATTCTTCATCTAAGGCAGGGATACAACAAGTTCGCGTTCATCCATATAAAAAGCAATCCAAAGAATTATCATCTCTTTTTGTGGGACAAGAATTTGAAGCACACAAAGGGTCAATTTCTACAATGAAGTTCAGTTTTGATGGAAGATACTTGGCTACTGCTGGTGAAGATGGTGTTGTGCGTGTATGGCAGGTGATTGAAGATGTGAGATTCGATAATTTCGACATTCACAATGTTGATCCTTCCTCTTTGTACTTCTCAATGAATCATTTGTCCAAATTAGACCCCTTGGATGTACCAAAAGAGACTGTAGGCAAGACGAAATTGAAGAGATCATCAAGCACAGCCTGTGTAATTTTTCCACCAAAGCTATTTAGGATATTGGAGAAACCTCTGCATGAGTTCTTGGGACACAGTGGCGAGGTCTTGGATCTATCTTGGTCAAAGAAAGGGCTTCTGCTGTCATCTTCTGTTGATAAGACAGTAAGGCTTTGGCAGCTGGGATGTGACACATGCCTAAGAGTTTACTGTCATAATAATTATGTTACGTGCGTTAGTTTCAATCCTATAGATGAAAATCATTTCATAAGTGGCTCAATAGACGGTAAAGTTCGGATTTGGGAAGTTCTTGCTTGTCAAGTGGTTGATTATATCGATATCCGTGAGATAGTAAGCGCAGTCTGTTACAGACCGGATGGAAAGGGAGGAATTGTGGGGTCCATGACTGGAAACTGCCGTTTTTATAATATTATAGATAATCGATTGGAGCTGGATGCTCAGATATGCTTAAATGGGAAAAAGAAGTCGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGCGACCCGAGTAAACTAATGGTCTGTTCTGTTGATTCGCCGGTTCATATAATTTCCGGGAGTGATGTCATTTGCAAATTCAAGGGTCTTCGTAATGGTGGAAACAAGATGTCTGCTTCTTTTACCTCGGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAACGTCTACGTTTGGAACTACAATTGCAAGGACAAAGCATCTCGGAAAAAGAAAATTTGGTCGTCCGAAAGTTTCTTCTCTCGTAGCGCATCAATAGCCATACCTTGGTCTGGTGTGAAAATCACACCTGAACCACCACTGTCCCCAACACGAGTTTGTGATACAGCGGGAAGTATCCCCGAAATGGAGCCGAAGTATCCTGATGACGATGGTGATAGAGAACACAAGGTTCCGTCATCATCACCAGATTGCTTCTCTCTAAGTCGCACTCTTTTTCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCGGAGGAGAAACTCCATGATTCTAGCTCAATGATCCCTTCCCCTTCAATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCTTGCCAGAGCATGCTTAGCTCTCCGCACATGTGGGGTCTTGTGATCGTAACTGCTGGATGGGACGGACGAATCAGAACATTTCTCAACTACGGTTTGCCTATTCGGTTATGA 2517 43.03 MLGRRKKDGNVFFASASGNSSGKKSPKRGRAPDGFDPSFGVTQSRDCVYCGCFGVGQFCGLIRCSCYDYIDGFVTVDLTSGCHGFESKRRGQEREQMMDLIYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPESLRYVGWIGNLESVCERRNKFFKWMGLDLDQTFDDRDEEEGDSFGRVYRDRILEDCGTVLRLSGSEEELSSSLTMSSMSNEAPESSGNVLVEENHVYTIRNLDNGTEFIVDSFSQDGVLSMLREVGSNRSFSFDEFERNIGQSPLVQQFFRKNVEKAGPIVNSRKEAKKGWLRKLGAVACIVDNGVGAMKNGASNSSSKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGVVRVWQVIEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETVGKTKLKRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGCDTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVVDYIDIREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGSDVICKFKGLRNGGNKMSASFTSDGKHIVSASEENVYVWNYNCKDKASRKKKIWSSESFFSRSASIAIPWSGVKITPEPPLSPTRVCDTAGSIPEMEPKYPDDDGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSMIPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGLPIRL 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1609378 1614402 + CcPI632755_01g001670.1 Cco01g0167 169029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0167 838 PANTHER WD REPEAT DOMAIN 44 108 838 IPR040324 -
Cco01g0167 838 MobiDBLite consensus disorder prediction 735 751 - -
Cco01g0167 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 472 504 - -
Cco01g0167 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 512 546 - -
Cco01g0167 838 Pfam WD domain, G-beta repeat 508 544 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 Pfam WD domain, G-beta repeat 367 400 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 Pfam WD domain, G-beta repeat 467 502 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 546 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 MobiDBLite consensus disorder prediction 1 37 - -
Cco01g0167 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 472 504 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 MobiDBLite consensus disorder prediction 730 754 - -
Cco01g0167 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 402 - -
Cco01g0167 838 SUPERFAMILY WD40 repeat-like 366 828 IPR036322 GO:0005515(InterPro)
Cco01g0167 838 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
Cco01g0167 838 PRINTS G protein beta WD-40 repeat signature 490 504 IPR020472 -
Cco01g0167 838 PRINTS G protein beta WD-40 repeat signature 532 546 IPR020472 -
Cco01g0167 838 Gene3D - 356 696 IPR015943 GO:0005515(InterPro)
Cco01g0167 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 402 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 SMART WD40_4 547 586 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 SMART WD40_4 465 503 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 SMART WD40_4 638 678 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 SMART WD40_4 506 545 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 SMART WD40_4 597 637 IPR001680 GO:0005515(InterPro)
Cco01g0167 838 SMART WD40_4 362 401 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0167 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0030 Cco-Chr1:208336 Cco01g0167 Cco-Chr1:1609378 1.50E-141 dispersed
Cco01g0167 Cco-Chr1:1609378 Cco11g1873 Cco-Chr11:31376737 2.00E-106 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34