Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0179 ATGTCTTCCGTTACCCAAACAACACGCATGCCGATGCCGTACTATTTCCATCGTCATCTAACGACGCGCGCCAAGCCGTTTCGCGATTCTTTTTCTTTTCTTGTTTTTGTGACGGCGTTTTTCTCCCTCGACGAGCGACAGAGAGGATCGGCGGTTGATTTTCGAGCGGTTTCTGTCACCGGTGCAGTGACGAAGGAGTTTCAGATTTTGGAGGTATTTGTCTCTGTATATCTCTCTGTGGAGGAAGGAATTGGAATTAGTGATTTCTTGATAGGTTGTGGAAGAGATGATATGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTTTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCTTCAAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGTACTACTCTTTCTCATCTTAAGTTGCTCTGTTATTTCTGCTTACTTCATTGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAGATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGACACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTACATGGATATGAATGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGTTCCTCCTTCTCTATATTGATATGAAACGAAATGAAAGCAATTACAAACAATCCCCAGCCGATTCAAGAGGGCTGATCCTGCTTTCACTTAACGAAGAACAGCAGCTAGCAGTATTTGTTGTGATTATGAGAATGCAGCACAGTGATAATTTTCATGACTATATTATTCTAGAGCCTCAGCAAGCCATGCTCAATTGTACAAGCTTTAATTCATGTGAGAGTTGCTTTAATAGGGGAGACAATGGAGAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCGTCTGTTATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAGCCCGTTTCAAAAAACAAAAGGCCTCGACAACCGACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAGGACATTGGGATTCTGGATTGGTACAGCCACATGATGGTAAACAATGTAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGCTCATGTGTATCAAGAGCACAGACTGATACCTGGCTATCTCCTACCCAATCCAATAGTTATAAACACCCAGTACATGACATGGCGCAGGATTATAAAACTGTCCCTGGCGTTGGTTGGTCCTTTCTGTTAGCAACTTCAACCTCTCATTTGGTTAAGTTAAGTGATGATCAACAAATACTGGACCCCACTGAAAATGGGAGGAACGGTGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTAGCTGCTGAGAAAGAACCTTCTCAACCAAGCAGTGTGTCTTGCGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTATCTATAGAAAGAAAATCAGAACCATCGCAGGCATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCATCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTCATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACCCCAATAGAAGTTGAAGGGGCTGTAGTAATCCCGGATTCCCCTGCACTATCTGAAGATCACGACGCCTGGCTAGCTGTCAAGAACAATGGGAGCATATACTTTGACTTGATCCTTCCTGTTGTTGTTGCAGCTGCAGATGTTGGAGTGAATAGGATCCCATCTCTGCAGTCTGGTTGGAAGTCAGGGGAAGCTCTGATGAGCCAGCTAGTGGCGGGGGTGGGGGTGGTGAGATGA 2769 44.56 MSSVTQTTRMPMPYYFHRHLTTRAKPFRDSFSFLVFVTAFFSLDERQRGSAVDFRAVSVTGAVTKEFQILEVFVSVYLSVEEGIGISDFLIGCGRDDMYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLVLLFLILSCSVISAYFIADHESDEVYAQITLMPESDQNEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRFLLLYIDMKRNESNYKQSPADSRGLILLSLNEEQQLAVFVVIMRMQHSDNFHDYIILEPQQAMLNCTSFNSCESCFNRGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPAHDGADLTKPGHWDSGLVQPHDGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRAQTDTWLSPTQSNSYKHPVHDMAQDYKTVPGVGWSFLLATSTSHLVKLSDDQQILDPTENGRNGETVASCRLFGIDLNHLAAEKEPSQPSSVSCDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEIQCNQSSSSNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPIEVEGAVVIPDSPALSEDHDAWLAVKNNGSIYFDLILPVVVAAADVGVNRIPSLQSGWKSGEALMSQLVAGVGVVR 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1714161 1721468 + CcPI632755_01g001790.1 Cco01g0179 169041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0179 922 MobiDBLite consensus disorder prediction 726 754 - -
Cco01g0179 922 ProSiteProfiles B3 DNA-binding domain profile. 220 320 IPR003340 GO:0003677(InterPro)
Cco01g0179 922 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 383 839 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco01g0179 922 FunFam Auxin response factor 218 313 - -
Cco01g0179 922 Pfam Auxin response factor 424 502 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco01g0179 922 SUPERFAMILY DNA-binding pseudobarrel domain 211 311 IPR015300 -
Cco01g0179 922 Gene3D - 745 838 - -
Cco01g0179 922 Pfam B3 DNA binding domain 220 307 IPR003340 GO:0003677(InterPro)
Cco01g0179 922 FunFam Auxin response factor 745 838 - -
Cco01g0179 922 MobiDBLite consensus disorder prediction 727 754 - -
Cco01g0179 922 Gene3D - 217 322 IPR015300 -
Cco01g0179 922 SMART B3_2 220 320 IPR003340 GO:0003677(InterPro)
Cco01g0179 922 ProSiteProfiles PB1 domain profile. 750 831 IPR053793 -
Cco01g0179 922 FunFam Auxin response factor 459 530 - -
Cco01g0179 922 Pfam AUX/IAA family 796 829 IPR033389 -
Cco01g0179 922 Pfam AUX/IAA family 740 786 IPR033389 -
Cco01g0179 922 MobiDBLite consensus disorder prediction 529 580 - -
Cco01g0179 922 MobiDBLite consensus disorder prediction 529 543 - -
Cco01g0179 922 Gene3D - 459 532 - -
Cco01g0179 922 CDD B3_DNA 218 306 IPR003340 GO:0003677(InterPro)
Cco01g0179 922 SUPERFAMILY CAD & PB1 domains 745 826 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0179 Cco-Chr1:1714161 Cco07g1226 Cco-Chr7:26146254 1.10E-211 dispersed
Cco01g0179 Cco-Chr1:1714161 Cco09g0944 Cco-Chr9:8866102 1.40E-190 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58551 PF02309 AUX_IAA 2.40E-12 CL0072 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0179 K14486 - csv:101209208 863.603